Input parameters:

  Query = C10H11.8 (Len=382)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C10H11.8, Len=382):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRFKKLKNRQIFIFFKKYFMTPEKSFETEKHFQNTNQVPTEAPPSFDPSPHALLVSASYDLTIRLWQLSTGKCIGTIPHN 80  
WD40-rpts                                  (_________________WD 1________________)   (_________

Query       81 EGQVNALSLTSTGRDLAVGAWQKVRIYDVSSGKDPKATIELPKNVTVVGFEAAGRWMYTGGDDGVCRIWEMRNNQLVANR 160 
WD40-rpts      _______WD 2________________)   (_________________WD 3________________)(_________

Query      161 LLSFPGSTVTSIVPNTHQTHLFVSTNSAHVWVWDVVNHIFMRLPMPDDLKMQEFVQKLAVHPSGKKLTGITNKGRLLCWD 240 
WD40-rpts      __________WD 4___________________)         (________________WD 5_______________)

Query      241 LMTREVVESSAFDMFKSPIVPIEQDTGTYGCLRDEDKHYKMREGHGLSCRYSPDGKYIVASGSEKEVYVFNSETMEIKGS 320 
WD40-rpts      (_____________WD 6_____________)(_________________WD 7________________)   (_____

Query      321 LQTECGWNWDAIFSSEGRYIFTGGNDNQVKIWDVENNKKVAQWDGHIKPLTAMCMNGPTPPP 382 
WD40-rpts      ____________WD 8________________)                             

8 WD40-repeats found in QUERY=C10H11.8 (Len=382):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    29-67       6.88  398.79  0.00026       30.0%     49.86
  WD 2:  Seg  8    71-108      7.98  444.49  6.4e-05       22.5%     54.55
  WD 3:  Seg 12   112-150      9.45  505.09  9.7e-06       25.0%     47.84
  WD 4:  Seg 15   151-194      8.20  453.21  4.8e-05       27.5%     57.20
  WD 5:  Seg 20   204-240      7.82  437.81  7.8e-05       20.0%     40.50
  WD 6:  Seg 23   241-272      4.28  291.36  0.00735       12.5%     41.38
  WD 7:  Seg 26   273-311      7.38  419.71  0.00014       22.5%     46.60
  WD 8:  Seg 29   315-353      9.37  501.57  1.1e-05       25.0%     57.07

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-67     EKH----FQNT--NQVPTEAPPSFDPSPHALLVSASYDLTIRLWQ
   WD 2   71-108    -GK----CIGTIPHNEGQVNALSLTSTGR-DLAVGAWQ-KVRIYD
   WD 3  112-150    -GK----DPKATIELPKNVTVVGFEAAGR-WMYTGGDDGVCRIWE
   WD 4  151-194    MRNNQLVANRLLSFPGSTVTSIVPNTHQT-HLFVSTNSAHVWVWD
   WD 5  204-240    -------PMPDDLKMQEFVQKLAVHPSGK-KLTGITNKGRLLCWD
   WD 6  241-272    ------------LMTREVVESSAFDMFKS-PIVPIEQDTGTYGCL
   WD 7  273-311    RDE----D-KHYKMREGHGLSCRYSPDGK-YIVASGSEKEVYVFN
   WD 8  315-353    -ME----IKGSLQTECGWNWDAIFSSEGR-YIFTGGNDNQVKIWD

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD