Input parameters:

  Query = C12C8.2a (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C12C8.2a, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIRTDNLSDLASARDYWRTDKYISFVITFQFYLLLDTMSDSFNWPAGNNEARERLGEKFESLHLDSRISTSHAKPLSNAD 80  
WD40-rpts                                                                                      

Query       81 PVVVPIYHSSTYRFKTVDQFNEDNHGANFVYRRCGNPTTENVEVVINEIEGGAGSLLYNSGLAAISAVFLEFLSSGAHMI 160 
WD40-rpts                                                                                      

Query      161 VMNPIYSGTSSFINETLARFGVEITSVDVEKEKDFAGAVEKAIRPNTKMIYFESIANPTMAVPDILGTIEVAKKYKILTC 240 
WD40-rpts                                                                                      

Query      241 LDATFSSPYNIQPLKLGADISLHSCSKYIGGHTDVIAGVVTVSSYDNWKKLKLQQLTTGSSLSPYDAALLTRGLKTLGLR 320 
WD40-rpts                             (_______________________________________WD 1_____________

Query      321 VDRISENAQKTAEFLESHPKVERVFYPGLPSHPQHQYAKQVMKQFAGMIAFDVGTAENAIKLVESLKLIIHAVSLGGTES 400 
WD40-rpts      _________________________)                                                      

Query      401 LIEHPLSMSHGKHLLRYLDGPTVAPGLLRFSVGIENVEDIIGDLNDALEKL 451 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=C12C8.2a (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   264-346      2.79  229.77  0.04872       22.5%     15.88

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  264-346    SCSKYIGGHTDVIAGVVTVSSYDNWKKLKLQQLTTGSSLSPYDAALLTRGLKTLGLRVDRISENAQKTAEFLESHPKVERVFY

   WD40 Template    ECLRTLSGHTSGVTSVSFSPD--------------GKRLV-----------SG--------------------SEDGTIKVWD