Input parameters:
Query = C13B9.2 (Len=458)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C13B9.2, Len=458):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATRKAVRTAFEKCLLAVEPRSIVRNAISLNPSLLKIADYNYSLSNSTKIVVIAFGKASILMAKGARDQLKSSLLQKTIV 80
WD40-rpts
Query 81 IAPEQQKGIENELENDTEILYGARDNLPDEKSVFATRKVISEIRDFDSESTIFLFLISGGGSALLTSPSAPLDLAEKLET 160
WD40-rpts
Query 161 IRIMQAHGATIQELNTIRQNLSDVKGGKLLREIKKGCSIALIISDVIGNPVELIASGPTVIPAHQQDKFIISNILESLKI 240
WD40-rpts
Query 241 NKLELPVNVKNVLENHEKEQLPENTSRFQNFIISSNNFALRAAAEYLTSSGYNSTIVTSSLSGNAAEIGKKFAEIITEKS 320
WD40-rpts
Query 321 ITSSHLLKNSNLTIENYPIALLFGGETTVHLSENPGKGGRNQEMVLSCLDALKTRVPAHNFTFLSAGTDGQDGPTDAAGA 400
WD40-rpts (________________________WD 1_______________________)
Query 401 IISNEDLPLNSLLNSSEFLQNSDSYNFWRQFKGGANHILTGPSGTNVMDIQILLLDQL 458
WD40-rpts
1 WD40-repeats found in QUERY=C13B9.2 (Len=458):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 344-396 3.08 241.91 0.03368 20.0% 9.94
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 344-396 GGETTVHLSENPGKGGRNQEMVLSCLDALKTRVPAHNFTFLSAGTDGQDGPTD
WD40 Template TGECLRTLSGHTSGVTS-------------VSFSPDGKRLVSGSEDGTIKVWD