WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: C13F10.6    [Caenorhabditis elegans]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = C13F10.6 (Len=470)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C13F10.6, Len=470):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIIEFVERFKDRNSLELSSRRLRELCLKTPISGNFAIRLEEDPNWPSILTLLMRPRNFSSRLSVRNCSDVPEDERSEIV 80  
WD40-rpts                                                                                      

Query       81 GYNYKDTIQNPDVFFNGVSKRLLNRIVEFEIRCRRFTVQILDNIEKFPKLNRIIVRNARNFSFELDEESGDAAVLDRIES 160 
WD40-rpts                                                                                      

Query      161 LELHLDRQWCTEIERMKRLINPNLKHFCCHVNPSLSKNSWFIEEIMVEMALHEVQLETCQLVFPDPQMPRNLIIALTQFM 240 
WD40-rpts                                                                                      

Query      241 SDRSRVLQVFITNGPYNLSPTRKMIPTLNIQFRDEEDNTVKDLADACPSIFKKAEVIHMTNLHEDGFIQLETVLPIMYSV 320 
WD40-rpts                                                          (___________________________

Query      321 KELLISSCPQKEEICPIDQILAFIPSTVRTLYLNDCKLTPSSIDLLISRCSTTLRNLHFHNNGSCNTVQNFTKLLDGLQE 400 
WD40-rpts      ____________WD 1_______________________________________)                        

Query      401 LRILELDMLIPHLLFPKIVEHQKLEKLIGLVNGTLPENSLEILRQHFNHVNLKKIDRQKHQLTVSNPSHH 470 
WD40-rpts                                                                            



1 WD40-repeats found in QUERY=C13F10.6 (Len=470):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   293-376      3.50  259.28  0.01978       17.5%      9.53
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  293-376    KAEVIHMTNLHEDGFIQLETVLPIMYSVKELLISSCPQKEEICPIDQILAFIPSTVRTLYLNDCKLTPSSIDLLISRCSTTLRN

   WD40 Template    TGECLRTLSGHTSGVTS------------------------VS---------------FSPDGKRLVSGSEDGTIK-----VWD


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Last modified: 09 Jan 2019