Input parameters:
Query = C13F10.6 (Len=470)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C13F10.6, Len=470):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKIIEFVERFKDRNSLELSSRRLRELCLKTPISGNFAIRLEEDPNWPSILTLLMRPRNFSSRLSVRNCSDVPEDERSEIV 80
WD40-rpts
Query 81 GYNYKDTIQNPDVFFNGVSKRLLNRIVEFEIRCRRFTVQILDNIEKFPKLNRIIVRNARNFSFELDEESGDAAVLDRIES 160
WD40-rpts
Query 161 LELHLDRQWCTEIERMKRLINPNLKHFCCHVNPSLSKNSWFIEEIMVEMALHEVQLETCQLVFPDPQMPRNLIIALTQFM 240
WD40-rpts
Query 241 SDRSRVLQVFITNGPYNLSPTRKMIPTLNIQFRDEEDNTVKDLADACPSIFKKAEVIHMTNLHEDGFIQLETVLPIMYSV 320
WD40-rpts (___________________________
Query 321 KELLISSCPQKEEICPIDQILAFIPSTVRTLYLNDCKLTPSSIDLLISRCSTTLRNLHFHNNGSCNTVQNFTKLLDGLQE 400
WD40-rpts ____________WD 1_______________________________________)
Query 401 LRILELDMLIPHLLFPKIVEHQKLEKLIGLVNGTLPENSLEILRQHFNHVNLKKIDRQKHQLTVSNPSHH 470
WD40-rpts
1 WD40-repeats found in QUERY=C13F10.6 (Len=470):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 293-376 3.50 259.28 0.01978 17.5% 9.53
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 293-376 KAEVIHMTNLHEDGFIQLETVLPIMYSVKELLISSCPQKEEICPIDQILAFIPSTVRTLYLNDCKLTPSSIDLLISRCSTTLRN
WD40 Template TGECLRTLSGHTSGVTS------------------------VS---------------FSPDGKRLVSGSEDGTIK-----VWD