Input parameters:

  Query = C14B1.4 (Len=376)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C14B1.4, Len=376):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDTSENAASAAEQQPTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAGASASGSANYKLM 80  
WD40-rpts                  (______________WD 1______________)                         (________

Query       81 CTLEGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVT 160 
WD40-rpts      ___________WD 2___________________)   (_________________WD 3________________)   

Query      161 SRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIW 240 
WD40-rpts      (_________________WD 4________________)   (_________________WD 5________________

Query      241 DTANGQCIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGS 320 
WD40-rpts      )   (_________________WD 6_________________)   (__________________WD 7__________

Query      321 EDCKIYIWNLQTREIVQCLEGHTQPVLASDCHPVQNIIASGALEPDNKIHIWRSDV 376 
WD40-rpts      ________)   (__________________WD 8_________________)   

8 WD40-repeats found in QUERY=C14B1.4 (Len=376):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-46       5.98  361.71  0.00083       10.0%     18.65
  WD 2:  Seg  4    72-115     10.28  539.27  3.4e-06       45.0%     57.39
  WD 3:  Seg  8   119-157     10.38  543.30  3.0e-06       40.0%     57.47
  WD 4:  Seg 12   161-199     10.22  536.96  3.6e-06       35.0%     56.72
  WD 5:  Seg 16   203-241     11.01  569.61  1.3e-06       45.0%     55.88
  WD 6:  Seg 20   245-284      9.43  504.34  9.9e-06       40.0%     53.46
  WD 7:  Seg 24   288-329      8.43  463.06  3.6e-05       32.5%     56.71
  WD 8:  Seg 28   333-373      8.19  452.88  4.9e-05       30.0%     52.19

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-46     ----------QQ-PTQQIDQLTVPNA---PDGGSSAPAP--STSPNSISP
   WD 2   72-115    SGSANYKLMCTL-EGHTKSISSAKFS---PCGKYLGTSS--ADKTVKIWN
   WD 3  119-157    -M----ICERTL-TGHKLGVNDIAWS---SDSRCVVSAS--DDKTLKIFE
   WD 4  161-199    -S----RMTKTL-KGHNNYVFCCNFN---PQSSLVVSGS--FDESVRIWD
   WD 5  203-241    -G----MCIKTL-PAHSDPVSAVSFN---RDGSLIASGS--YDGLVRIWD
   WD 6  245-284    -G----QCIKTLVDDENPPVAFVKFS---PNGKYILASN--LDSTLKLWD
   WD 7  288-329    -G----KTLKQY-TGHENSKYCIFANFSVTGGKWIISGS--EDCKIYIWN
   WD 8  333-373    -R----EIVQCL-EGHTQPVLASDCH---PVQNIIASGALEPDNKIHIWR

   WD40 Template    TG----ECLRTL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD