Input parameters:
Query = C14C10.2a (Len=341)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C14C10.2a, Len=341):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVARIAKQSFESAAERKNTITSIQNIIRCSLTEFEKGAEDYRIFRETRDTPDWGVVRMSSIAMSHQRSEQAELFLKQQME 80
WD40-rpts (___________________________________________
Query 81 EYGGSARRQARNVDVSDDQICAAIQRVLNKDKTGNSAFQFFEFLKKYKFCSNRDVFARVLIEFTVKKFGWKAGLERLNEL 160
WD40-rpts __________________WD 1__________________________________________________________
Query 161 VHKDQRTKSMTMSVFFILEDAWNAKEFEQAEILLSKTKFIKPSTLRSLQLFIRFNEMPRLEIADYCKRNSVTLSHEDAMF 240
WD40-rpts ___)
Query 241 FINLAGKLKYPMPLIRLLEIHQFIQIPTSTFFSIFDELIKLAGKSGKTENLEELMWKVKANREVSDNQKSILYGKIRHFY 320
WD40-rpts
Query 321 KCLNVKAPEKLYILINCTDSQ 341
WD40-rpts
1 WD40-repeats found in QUERY=C14C10.2a (Len=341):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 37-164 3.26 249.20 0.02695 30.0% 6.69
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 37-164 GAEDYRIFRETRDTPDWGVVRMSSIAMSHQRSEQAELFLKQQMEEYGGSARRQARNVDVSDDQICAAIQRVLNKDKTGNSAFQFFEFLKKYKFCSNRDVFARVLIEFTVKKFGWKAGLERLNELVHKD
WD40 Template GECL-----RTLSGHTSGVTSVS-----FSPD--------------GK------RLVSGS-------------EDGTIK---------------VW-------------------------------D