Input parameters:
Query = C15F1.2 (Len=801)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C15F1.2, Len=801):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRIFLFFLLVLFQSIFAQYESPDPSSPAPSSNYCAAFVECAAVSLLEERLCLGNSLWRPYWLPERRDTYDCHHKLKNDYN 80
WD40-rpts
Query 81 TLERLEEELDGQLIACLNENVQPLDKKTNEQCQILGRPARFSFSRTITYVPNHCFTGVKRRIERQCGEVAKCCPSIEKCK 160
WD40-rpts
Query 161 LLSSESTLQKMINTTRTNLRKRADDCKKGMPIAPIFLDGLLFSEDESNEKTWSPTGHVNVRFTDKESNQAQRDGRKNGFV 240
WD40-rpts
Query 241 NVRFTTQQENEERARKLLIRYGDKEGDGLTLPKLSYPPQTNAKKEFDQKFNAAMKKTDSIKQRIETLDRSKIAKEGFDSL 320
WD40-rpts
Query 321 IDAATVSETINNMPPMGTVTLLQSNDDNIVVEDSGDKTSISSSIVFGSSSESVTTSPIIFVEKIALPQMNQTIEKCRVST 400
WD40-rpts (________________
Query 401 TIRFSNILKILGENPNSKDFKEVKGLVERFEQRLKGKELDDEQKNKAKLIEKALEMLLENFDDTDYKKVERDVEKVVNET 480
WD40-rpts __________________________________WD 1__________________________________________
Query 481 RDLPICQETEESMNSTVVFESIDDPTSTMLVDDNGDKFIIQKGATTLIVGGEKEEDPEKKKGEEVIKNFISEEYKVEIDA 560
WD40-rpts ________)
Query 561 FRREHNLWTKQNSNTTLIKRNETTCDMYMRCRSQMHLAVDSCAWRFASDQLLATMAESAESLLYKDDGVCSQKDGDKVIE 640
WD40-rpts
Query 641 LYEYMIKRNDKLRICLDNKNEKYFEDSVCLAYPEHKRHEYDDSLRRLLNTSFEYSKSRECFHDANLIQEKCTHLRDCCPN 720
WD40-rpts
Query 721 FDECREETFEVEVERTIISLTATINEIKQECVKRKAKEAVKNVVRQLLLNTDAGQKLQEIAQLGLDISRGARVVRMAKYR 800
WD40-rpts
Query 801 A 801
WD40-rpts
1 WD40-repeats found in QUERY=C15F1.2 (Len=801):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 384-489 3.06 240.89 0.03474 20.0% 5.55
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 384-489 IALPQMNQTIEKCRVSTTIRFSNILKILGENPNSKDFKEVKGLVERFEQRLKGKELDDEQKNKAKLIEKALEMLLENFDDTDYKKVERDVEKVVNETRDLPICQET
WD40 Template TGECLRTLSGHTSGVTSVSF-------------SPD----------------GKRLV---------------------SGS----------------EDGTIKVWD