Input parameters:

  Query = C15F1.3b (Len=1147)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C15F1.3b, Len=1147):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKYNKLLVSVVIVTFVTFGLLLAECFGKSIDYQEKSIFPSFVSQGFFETRTNNEEYIIEKIAQTQENGVDMRSTLHFT 80  
WD40-rpts                                                                                      

Query       81 QHGYLLNNISNLKIKFRQKTYTLNDVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRLSPCLIVTPLNCFYDIYRIHG 160 
WD40-rpts                                                                                      

Query      161 EISNWNKNTDFLNRRLRNSYIEAIGENDERPYVKSNYGPSLIKSWADHMFDLPSKSFTNSTKDALFQKIKLWLLSIEPRQ 240 
WD40-rpts                                                                                      

Query      241 KTCAASIHSCDTPLDSEHYFNICTDMQSVDNFAEKKTKFKLEDVDEEFAMNLDCVDDQEQFIEWMQELEIRKMYSHVTEK 320 
WD40-rpts                                                                                      

Query      321 PDYPNVVNQTCDKIFHDLNSTGIEFFDGSRSFSSTKSQFDTMQTEIVLLTPEMLLSAMQHSDFVNGFESIWTIEKAEELI 400 
WD40-rpts                                                                                      

Query      401 HEFRLALKEETEKFKENRMSKMIRVTSRVLDNTVTTKLQSFSEKQTIHFVVNVHSLIVILFTIFVWSGAPLRSAFMFFVR 480 
WD40-rpts                                                                                      

Query      481 DALTCLLFCFVCSTDGVIVLDTELIKYIIVLTLANLYFTTRSSFCTERLSRCIQREKRFPINSNFASLITVDTMTDSRQI 560 
WD40-rpts                                                                                      

Query      561 QYFLSTVTKYQAAQDSYSNELFERFPKNWGCTSILIFPIVFVYWYFIDSNFDKICVSVLPSFCLAAGEELFAKNMFWKER 640 
WD40-rpts                                                                                      

Query      641 EAMQAKQRLENEEQAESITGSSLEKLFAGNKPVSNTDKANIVKKSSIIRNQKPCLQDLSPGTYDVSNFMKYPHQASRIFR 720 
WD40-rpts                                                                                      

Query      721 EKIIGLYLRILKLRTLGVILCIPAILLIVISIGLLFIPVKRETLHTDSKQDDIFIEFEIFNFSTNWKIVNQNLKQFSEDI 800 
WD40-rpts                                                                                      

Query      801 ESIGTLYTISNWQKSFERFEQETNKNASAEWNILFKWINDEPINSAVTLFSEKSSGNQTIANPFKFRLRYGFDAKNETTV 880 
WD40-rpts                                                                                      

Query      881 IEIVQKIDELLSKCSKNLSPKAVGVLYEHYHRIAVVWNLFAFNQLTTAGIFIILLSIITFIFAITPTIKATFLFSLLVVG 960 
WD40-rpts                     (____________________________________________________________WD 1

Query      961 TQIEVAALVHLFSLDHHQIYTNLALFAGFLAAWDPFCALLRYRRRILYKSETRRTPELASKRRVLLPIVATADIAQFFVL 1040
WD40-rpts      ____________________________________________________________)                   

Query     1041 LITEFPKREVTCQNWWPFSSSRSSICSFFFHSHPSSIILATLSIFRQYIYLFSLFSFSHSSSDVSNKKSRGYCRCMSCFS 1120
WD40-rpts                                                                                      

Query     1121 IFFQRVWPQEHWNTANNEKGTQKESGC 1147
WD40-rpts                                 

1 WD40-repeats found in QUERY=C15F1.3b (Len=1147):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   896-1021     3.45  257.03  0.02120       15.0%      8.49

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  896-1021   KNLSPKAVGVLYEHYHRIAVVWNLFAFNQLTTAGIFIILLSIITFIFAITPTIKATFLFSLLVVGTQIEVAALVHLFSLDHHQIYTNLALFAGFLAAWDPFCALLRYRRRILYKSETRRTPELASK

   WD40 Template    TGECLRTLS-----GHTSGVTS------------------------VSFSP------------DGKR-----------LVS-----------------G-------------SEDGTIKV----WD