Input parameters:

  Query = C15H9.1 (Len=1041)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C15H9.1, Len=1041):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVILRSKITRLYWFRLFSNGQKKIEYSKLKVAVPKEIFPGEKRVSLSPNGVALLKKNGISVLIEENAGVLAGYSNEEYVR 80  
WD40-rpts                                                                                      

Query       81 SGADVGKHNEVFNTDIMLKVRPPTENEVSKLKSGCTLISFIHPGQNQALLDSLTKTDKTVFAMDCVPRISRAQVFDALSS 160 
WD40-rpts                                                             (________________________

Query      161 MANIAGYRAVIEAANHFGRFFTGQITAAGKVPPAKVLVIGGGVAGLSAIGTSRGMGAVVRGFDTRAAVKEHVESLGAQFL 240 
WD40-rpts      _________________WD 1_________________________________________)                 

Query      241 TVNVKEDGEGGGGYAKEMSKEFIDAEMKLFADQCKDVDIIITTALIPGKKAPILITEEMIKSMKPGSVVVDLAAESGGNI 320 
WD40-rpts                                                                                      

Query      321 ATTRPGEVYVKHGVTHIGFTDLPSRLPTQSSELYSNNIAKFLLHLGKDKTFFVNEEDEVARGALVVRDGQMKWPPPPINF 400 
WD40-rpts                                                                                      

Query      401 PPPAAPKSDKPSENTALVPLTPFRKTANQTLLLTSGLGSVSLLGIAGTNPQISSMSTTFALAGLVGYHTVWGVTPALHSP 480 
WD40-rpts                                                                                      

Query      481 LMSVTNAISGTTAAGALCLMGGGLMPQNSAQTMALLATFISSVNIGGGFLVTKRMLDMFKRKDDPPEHNYLFSIPAAVFL 560 
WD40-rpts                                                                                      

Query      561 GGYGYGVYTAAPLIHSYAYLGSSLCCVGALAGLSSQSTARVGNALGIIGVTGGIGATLGLLQPDFNTLCQMGGSVAMGSL 640 
WD40-rpts                                                                                      

Query      641 IGLGIANRIKVTDLPQLVAAFHSFVGLAATLTCLANFIQEHPHFLEDPSNAAAAKLALFLGTYIGGVTFTGSLMAYGKLQ 720 
WD40-rpts                                                                                      

Query      721 GILASAPTYLPARHVLNGALLAGNVGALGTYMYSTDFGTGMSMLGGTVGLSSLMGVTLTMAIGGADMPIVITVLNSYSGW 800 
WD40-rpts                                                                                      

Query      801 ALCAEGFMLDNSLLTVLGALIGSSGAILSHIMCKAMNRSLLNVILGGVGTKSKGTGEAKAIEGTAKEIAPVETADMLLNA 880 
WD40-rpts                                                                                      

Query      881 RSVIIIPGYGLCAAQAQYPIAQLVKELQQRGVRVRFAIHPVAGRMPGQLNVLLAEAGVPYDIVEEMEEINEDFKETDVAL 960 
WD40-rpts                                   (_____________________________WD 2_________________

Query      961 VIGSNDTINSAAEDDPNSSIAGMPVLRVWNSKQVIIVKRTLGTGYAAVDNPVFFNENTQMLLGDAKKMSEKLLEEVKSKP 1040
WD40-rpts      ____________)                                                                   

Query     1041 M 1041
WD40-rpts       

2 WD40-repeats found in QUERY=C15H9.1 (Len=1041):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   136-223      2.85  232.22  0.04523       27.5%     13.86
  WD 2:  Seg 23   910-973      3.13  243.82  0.03178       27.5%      0.01

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  136-223    TDKTVFAMDCVP--------RISRAQVFDALSSMANIAGYRAVIEAANHFGRFFT------GQIT----------AAGKVPPAKVLVIGGGVAGLSAIGTSRGMGAVVRGFD
   WD 2  910-973    RG------VRVRFAIHPVAGRMP-----------------------------GQLNVLLAEAGVPYDIVEEMEEINEDFKETDVALVIGS-------------NDTINSAAE

   WD40 Template    TG------ECLR--------TLS-----------------------------GHT------SGVT----------SVSFSPDGKRLVSGS-------------EDGTIKVWD