Input parameters:
Query = C16D2.1a (Len=194)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C16D2.1a, Len=194):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNFFQNYFRFSNTKLSTELGDVATPAVPSPIEATTAVCATPNQARRVIKTIDGQQLVLCANDVKYLSVVENMFANLNNLS 80
WD40-rpts (___________________________WD 1___________________________)
Query 81 SDASDEQFIVIPISIESKTMQKIIDWSRAAKKIDEKTLDFCQFFPNLTLKECIQILEASLFLETSYLGKCAAKWVASKLE 160
WD40-rpts
Query 161 GKSTGEMAQILEVAHVGLDPTSEQQLAQFRRVTL 194
WD40-rpts
1 WD40-repeats found in QUERY=C16D2.1a (Len=194):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 21-80 4.05 281.76 0.00989 20.0% 12.78
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 21-80 DVATPAVPSPIEATTAVCATPNQARRVIKTIDGQQLVLCANDVKYLSVVENMFANLNNLS
WD40 Template GECLRTLSGHTSGVTSVSFSP----------DGKRLVSGSEDGT-----------IKVWD