Input parameters:
Query = C16H3.1 (Len=211)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C16H3.1, Len=211):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGAFFTNHIVEEELDTQPAIERQTPPSIDYLIEITNFSKREIQQLYRSFKELWPIGTVDLEQFQLIYASIFPNGDSKGYA 80
WD40-rpts (___________________________________________________________WD 1________________
Query 81 ELVFKNIDQNRVGTVTFLDFITNYSKIAKGTLDERLDWIFTLYDTNRCGFLAYNEIFHVVKSMYQMMDSSLKPAVLATIC 160
WD40-rpts ___________________________________________)
Query 161 RQHVKIVFKNLNIANNGKVSKAEFLQRCRSDSDILASMELFGSFSSGLLNI 211
WD40-rpts
1 WD40-repeats found in QUERY=C16H3.1 (Len=211):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-124 3.03 240.02 0.03568 20.0% -11.67
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-124 MGAFFTNHIVEEELDTQPAIERQTPPSIDYLIEITNFSKREIQQLYRSFKELWPIGTVDLEQFQLIYASIFPNGDSKGYAELVFKNIDQNRVGTVTFLDFITNYSKIAKGTLDERLDWIFTLYD
WD40 Template TGECLRTLS-----GHTSGVTSVS------------FS---------------PDGKRL----------------VS-----------GSEDGTIK-------------VW------------D