Input parameters:

  Query = C18D11.1 (Len=263)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C18D11.1, Len=263):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKVEVQIRRCFCCGLSVATSAIAIYTLILYLLLSGLAAWGLSDTTQNGDASHYNSCELEAQGKINAENRKLTFTGGRTV 80  
WD40-rpts                                                                                 (____

Query       81 VVVQDSTSYHCSLGLYTEELKYSASNRYVSLVIDILLYVSLVLASIVLLIGLCSYNQWLLLPWAFLMIIDIVRGFISVFF 160 
WD40-rpts      ______________________________________________________________WD 1______________

Query      161 IFWYSYGNLARIATGIFFLGLQFLHISLWMIIAAKFQRIYNRKNGIPDKVYDVRGGSRAPSTYYGETHAVAPPPHRGATD 240 
WD40-rpts      ___________________________________________________)                            

Query      241 YYPEQHRPQQQYGHYDQQPPYRY 263 
WD40-rpts                             

1 WD40-repeats found in QUERY=C18D11.1 (Len=263):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    76-212      3.75  269.38  0.01450       27.5%     33.14

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   76-212    GGRTVVVVQDSTSYHCSLGLYTEELKYSASNRYVSLVIDILLYVSLVLASIVLLIGLCSYNQWLLLPWAFLMIIDIVRGFISVFFIFWYSYGNLARIATGIFFLGLQFLHISLWMIIAAKFQRIYNRKNGIPDKVYD

   WD40 Template    TGECLRTLSGHTSGVTSVSFS------PDGKRLVSG----------------------SEDGTI---------------------------------------------------------------------KVWD