Input parameters:

  Query = C18E3.5 (Len=331)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C18E3.5, Len=331):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMVIPARNQMASQFLELPKRTSSLMAPTMVLQGHGGEIYTSQFSSDGSFLASAGYDQQIFLWNVFGECENFAVLKGHKG 80  
WD40-rpts                            (__________________WD 1__________________)    (___________

Query       81 AIMEVKFNADSSHLVSAGTDKTVRVWDMETGSCIRNFKSHTDIVNSVDVNRRGPQMICSASDDGTVMVHDMRSKEAAKKF 160 
WD40-rpts      ______WD 2________________)   (_________________WD 3_________________)   (______

Query      161 ICKYQQTAVTFNDAADNVICGGIDNQIKVWDMLRNDVRYVLSGHRDTITSLSVSHNGNFLLSNSMDCSLMSWDIRPFVPA 240 
WD40-rpts      __________WD 4________________)   (_________________WD 5________________)       

Query      241 QRLVARYQGASHNFEKNLLKCGWSPRDNYITAGSADRFVYVWNAKSRACVYKLPGHLGSVNCTALHPTQQILLSAGSDKT 320 
WD40-rpts              (_______________WD 6______________)   (_________________WD 7____________

Query      321 IFLGELDLEDY 331 
WD40-rpts      ____)      

7 WD40-repeats found in QUERY=C18E3.5 (Len=331):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    23-64       8.89  482.03  2.0e-05       30.0%     51.76
  WD 2:  Seg  7    69-107     10.05  529.84  4.5e-06       37.5%     56.80
  WD 3:  Seg 11   111-150      9.05  488.51  1.6e-05       40.0%     56.53
  WD 4:  Seg 15   154-191      7.81  437.21  8.0e-05       27.5%     55.41
  WD 5:  Seg 19   195-233      9.89  523.31  5.5e-06       37.5%     51.15
  WD 6:  Seg 24   249-283      7.38  419.42  0.00014       17.5%     46.14
  WD 7:  Seg 27   287-325      9.22  495.35  1.3e-05       27.5%     54.66

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-64     SSLMAPTMVLQGHGGEIYTSQFSSDG-SFLASAGYDQQIFLWN
   WD 2   69-107    -C--ENFAVLKGHKGAIMEVKFNADS-SHLVSAGTDKTVRVWD
   WD 3  111-150    -G--SCIRNFKSHTDIVNSVDVNRRGPQMICSASDDGTVMVHD
   WD 4  154-191    -K--EAAKKFICKYQ-QTAVTFNDAA-DNVICGGIDNQIKVWD
   WD 5  195-233    -N--DVRYVLSGHRDTITSLSVSHNG-NFLLSNSMDCSLMSWD
   WD 6  249-283    -------GASHNFEKNLLKCGWSPRD-NYITAGSADRFVYVWN
   WD 7  287-325    -R--ACVYKLPGHLGSVNCTALHPTQ-QILLSAGSDKTIFLGE

   WD40 Template    TG--ECLRTLSGHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD