Input parameters:

  Query = C18E3.9a (Len=298)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C18E3.9a, Len=298):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYHHGFHYYSTNNSHSYSRTRNPPKSWNLGPHELGSSTDPENRAMQESIINSVSEQTLQSWIDFREEINKKNLLLRNKLK 80  
WD40-rpts                                                                                      

Query       81 IPSEKIDDKYHTFPEKKQSDYADAEIYAGSDASQPSRNEYDRSKYVLNRKVRCAPTEIITDSSQSPGASPSSDQIFIDDS 160 
WD40-rpts                                                                                      

Query      161 QPSTTKRRWVISEPDDNSDKHVSSSENHQQREKIISPTEKTLQKSTSSNSSPTLKLFVTVPSSSNQECILHKYGHCIAPQ 240 
WD40-rpts                                                 (_______________________WD 1_________

Query      241 ICPFAHDGVVRKLEKKTVTAPFWQRKLPNISLCPGYPTLKCWDHKCGKRHILYPSDNI 298 
WD40-rpts      _____________)                                            

1 WD40-repeats found in QUERY=C18E3.9a (Len=298):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   204-254      3.00  238.76  0.03708       15.0%      1.60

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  204-254    KSTSSNSSPTLKLFVTVPSSSNQECILHKYGHCIAPQICPFAHDGVVRKLE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-----------KRLVSGSEDGTIKVWD