Input parameters:
Query = C18E3.9b (Len=302)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C18E3.9b, Len=302):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYHHGFHYYSTNNSHSYSRTRNPPKSWNLGPHELGSSTDPENRAMQESIINSVSEQTLQSWIDFREEINKKNLLLRNKLK 80
WD40-rpts
Query 81 IPSEKIDDKYHTFPEKKQSDYADAEIYAGSDASQPSRNEYDRSKYVLNRKVRCAPTEIITDSSQSPGASPSSDQIFIDDS 160
WD40-rpts
Query 161 QPSTTKRRWVISEPDDNSDKHVSSSENHQQREKIISPTENFFQKTLQKSTSSNSSPTLKLFVTVPSSSNQECILHKYGHC 240
WD40-rpts (_______________________WD 1_____
Query 241 IAPQICPFAHDGVVRKLEKKTVTAPFWQRKLPNISLCPGYPTLKCWDHKCGKRHILYPSDNI 302
WD40-rpts _________________)
1 WD40-repeats found in QUERY=C18E3.9b (Len=302):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 208-258 3.00 238.76 0.03708 15.0% 0.23
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 208-258 KSTSSNSSPTLKLFVTVPSSSNQECILHKYGHCIAPQICPFAHDGVVRKLE
WD40 Template TGECLRTLSGHTSGVTSVSFSPDG-----------KRLVSGSEDGTIKVWD