WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: C26H9A.2 [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = C26H9A.2 (Len=3354) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (C26H9A.2, Len=3354): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 METRDERTLSLLHLRKTFSEYLKIPVSGSRSNDPSRLLPLFHKVMSMYTPQQLNAEFKEVVHFATFLCSVLVKEVRQRAA 80
WD40-rpts
Query 81 STGTIEAAQSIAEFLRPGTELKGYTILEAIRFLLSSEDEIMIDAACKVSLPSTLVKTIYLFFDLPAAATTVTVTDLTENA 160
WD40-rpts
Query 161 TETEDEMLKNNEKLHDMIGQIMEGLCRFKCVSEELVRKDDLLLLFVGTTSQVAEANNCWRKLCARLLEVIADKSITNAVI 240
WD40-rpts
Query 241 KYVIVKKCVRIFVKNLSSAPSNSHSDAQKTAESIICLSCFLKNSAYLTDQLLDEFYEADGYTVIKDFLLKSETDNEIVRN 320
WD40-rpts
Query 321 ILLMAISLVNSGKFEITPQYTSGLVQLPAFQLPIPAGNGLSVRNLNAFALLYHVFLESTSESTSCTVIDILHSIYTCDPA 400
WD40-rpts
Query 401 NYFILDKEYPLSIFIDQLERKPHAVRVKLLELIEFAVFQLSHIPCRELISLCVLLKTEISAGKTAMCTIIVQMCFKLITV 480
WD40-rpts
Query 481 DAIIKDAFREVGLLDALCFIIRRMFEMYEKNIQNASFTVTSTSSRSQDQLKLSLLTTDLLTIIIKNNTENGKLFTECFGA 560
WD40-rpts
Query 561 KLLIEIVCEVNEEWRSSLLQLVKQLLIVAPTDQYIMHLVNTLQDRIPIENLEVMFSLLKALLGVVRESHKVRIQFRKSGG 640
WD40-rpts
Query 641 FLALSALLLGLEKRFTDLHPAGDGRIPREQCQMLEFVHIIFKVFTLSMRFEPSNAKYFSTEITWDSITSLLRLTSIFNES 720
WD40-rpts
Query 721 TVISIEETEWKSLTHTDLASEIAACHEVFRLDDNIEAGNVPKGMPFNIYFGCYVCRLIFNMALDNYEKMTSDIRWNDDGA 800
WD40-rpts
Query 801 SLEESIVSWTSSLLVHPGAIISMLCLLPSISASSMKWTIAAQYYVSLLLKAILKSERNQQIMCQVDMPKHLLRIAEKLFL 880
WD40-rpts
Query 881 TENHILLQPFYYLLERLSYQSLTPNQLRSFLRLDSPLCCRSLDDDEDDDDDSKIEIADNEGGPVPLQRVKALVSMMTPRD 960
WD40-rpts
Query 961 QYIGTAPSFVEFDMSVEGFAALYLPSLAPMFSTTKAERIFPPLNGFSFCTWIYLDALSDKKADAHPIRLLTVTRAVAPPN 1040
WD40-rpts
Query 1041 SDPPSKKPSQTAHLACFQCQFSAFDRSLLISTEESDQPGADLEKTANFQTDKLIRITLADQVRCGEWFHLAVVFNRSVLK 1120
WD40-rpts
Query 1121 SSQVSLYLNGRHISTQKLMYVAQNAGGAATQLAQTYSVNAVVGTLPALRRPSRLRFRLASIFLAEEPMTAETVRAVVQLQ 1200
WD40-rpts
Query 1201 PHYIGNYQTASTAPLFHEEKIVFSLSAAATQELTLAKIRTMYGKMDAEILSQHLGISPNDHSTPLRVLCNTISHAPGAGR 1280
WD40-rpts
Query 1281 TFGGVIVGYLGMRTFTPRPVPSLLDSIGGFASVYGLIAMAVDSEGLYASLKSLVSAIRSQPRLLATWNNNRSYQILAVLL 1360
WD40-rpts
Query 1361 EDKAKMLNSHIMHMVFNVTGTADTSREHAPTISNPSAFEDLLCDLKVWKGAPSELHKMLLEHFYELITDHQLNNLQVVRK 1440
WD40-rpts
Query 1441 SSLLSRILLIIHDEPTMIKNTDEIIFNLISAIMQPQCDSRSILKIGQSIAATLPTSESECYEDSHLPFHISEIQKLFIES 1520
WD40-rpts
Query 1521 SDPPPEALHQVYIRNRLLNIIANFLANSNTQVQQQMCDQLVRTLGFDWLFALMSPGVHSGTIYLALRILLLILNQPSLLA 1600
WD40-rpts
Query 1601 RFKEGSANGGWLSEADSVVRNRAAVVLGFSVSAHGGAVGSKIDINPELSNCGGFAALEHLMAAHADKPYPYYAMLSLLVG 1680
WD40-rpts
Query 1681 QPISALRFCDQFNMELVWTHVFGLNSTSSVFEAINSANFCFDAIIPLFAMIRTSIYHQSSIHQPWTVTNPSTVVQMITFM 1760
WD40-rpts
Query 1761 YQNSPAFFNIAHTDEFILALFSTLIEDTNAMGVKSEVANRRSQDGGGSPDAEYFQAFLAQPNVRIVMDLLKKICCDNLQV 1840
WD40-rpts
Query 1841 NTSKNDTIIDAILDNISESGNTRKTQIACLTSLLHSVLEHTVGTDLLSSSALPPNTQAQNIVQIVANISLLSSRAVDAFW 1920
WD40-rpts
Query 1921 NGLVFGSESMRMLSTLYHLQVIASKKVNKAVNAEPITGCIMRMTLFILSRPIDSVPVQLSVLDALSTLVSKRYLFLSSNE 2000
WD40-rpts
Query 2001 AWFFASLTHLIFMLSVTPDVLFQDNSSSSDLDRTSAQVAMCACRVWSDVICAKQALIEETFKKQSVTDINAARALLSHSA 2080
WD40-rpts
Query 2081 GVYWQQFVDSQLRAIQTGGSSAQGSAVTAKDIIQQQISSKFNRVASGITRFAAKRSMSTTTALPSSGSVAAWKSTSTDKQ 2160
WD40-rpts
Query 2161 VIFMWLRVHVSLIKELVRAQSTRYTEWHAHVRKWCLHDWHQWEAELTRERGIWGPERASKLEKFKLDLTEGPTTRMRRKL 2240
WD40-rpts
Query 2241 IPNRNFYHIYPFRPHLEAPSAKAQRAKVAISFDSKPYYETCLRHRRRTLDTRIIDSSNVSTASPEDGSGSSNLLGYSFTD 2320
WD40-rpts
Query 2321 LSQINSSLIRRLSTTAPATSNVSGTSLELNEEECETSERKEDDESISSISEKTDSNGVQSSGPSTSSNTTKEAKKEEKKE 2400
WD40-rpts
Query 2401 EKKAGPDNQTLLRLLEQGEQLHSMFRCARIQGLETAEGLLLFGRDHFYVVDGFTLLKTKEIRDLDFLSQEMHDPIVPYPA 2480
WD40-rpts
Query 2481 TGATQPPKSSRLCSKFSYNMIREVHKRRYLLQPIALEVFSSDGRNYLLAFPKKIRDRVFDKLTSMAINLSSGGSDSLGGQ 2560
WD40-rpts
Query 2561 KANVAIETTGRGASLLSSLIGQQSVTQRWLSGNISNFQYLMHLNTLAGRCYNDLSQYPIFPWVLADYTSSQLDFNNISTF 2640
WD40-rpts
Query 2641 RDFSKPMGAQSPDRLEQFLKRFREWDDPSGETPPYMYGTHYSSAMIVVSYLVRLEPFTQQFLSLQGGHFDLADRMFHSVG 2720
WD40-rpts
Query 2721 DAWTSASRNNMADVKELIPEFFTLPEMFTNTNHFDLGVKQNGIHVNDVLLPAWCHGDPREFIRLHRQALESDYVSSHLHE 2800
WD40-rpts
Query 2801 WIDLIFGYKQNGEEAVKNSNLFHHLFYEGSVDFERIDDPLTRNATIGFVNNFGQIPTQLFKKPHPQKKVNILEGFSNTPG 2880
WD40-rpts
Query 2881 VTTSRLFYHAIHNMSAPQTPFKELRSAIGSIHQNDKIGVVALEQNKVFIGTNRYITWGLPDRSVRMGQIDNDKSVCVHEM 2960
WD40-rpts (________
Query 2961 CEVDEMTCAAAGDETTLFCGNTSGCITVWKVNNKPLSMKKLSVLNGHSDAITCLVSCQSHAVLVSASRDLTVLVWHLSEM 3040
WD40-rpts _________WD 1________________) (____________________WD 2___________________)
Query 3041 FLIRQLPKHPHAVLAVAVNDATGDIATACSTLLHVWTLNGELLAVLNTCDVAPAIDPQQMIISLAFSTMNEWDNDNVIMC 3120
WD40-rpts
Query 3121 GTSDGIVKIYSCVVFENDGSVSEHPALENPNSNSNENHDRSAAIAARLEKQRKRLKNSSTTATSSSVSGSGSASLTSPGP 3200
WD40-rpts
Query 3201 ASPSAGGSRATNIDVGGAQFVRVLVQRTALTMHTAFNRPDNVHPAPITAIAPSRDHRSLYVGDGIGRVWCWQSAEGGGRA 3280
WD40-rpts
Query 3281 DHWVQDVTRQRCDDCEHKFTLADRKHHCRNCGQIFCSTCSRFESHITRMNISRPVRVCRKCFQRLQQSSNLHNL 3354
WD40-rpts
 2 WD40-repeats found in QUERY=C26H9A.2 (Len=3354): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 33 2952-2990 2.89 233.90 0.04298 17.5% 47.43 WD 2: Seg 37 2992-3036 6.38 378.11 0.00050 32.5% 52.65Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2952-2990 -DK-----SVCVHEMCEVDEMTCAAAGDETTLFCGNTSGCITVWK WD 2 2992-3036 NNKPLSMKKLSVLNGHSDAITCLVSCQSHAVLVSASRDLTVLVWH WD40 Template TGE-----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |