Input parameters:

  Query = C27F2.1 (Len=673)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C27F2.1, Len=673):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSKSRSSSKEKDSKKEKKKDKEKSSKEKKEKKDKKEKKSKTIKPEPEPEPVNEYEDDFEDYEDDFEEDDEEEKKAPKVE 80  
WD40-rpts                                                                                      

Query       81 EKPQKESKVEAEVDNEFVSFESNIMQRLATSHMRRTEASPKPTIAPKISNAQITVQSTIDNKPYSYHNEEERQTQEQRAF 160 
WD40-rpts                                                                                      

Query      161 GRLNKLRGLISIEVTKSQVFTDLSSNIFEPFNSLPSNKSHALTQTGKDCHTEEVQTERGETEEKETQCPHSESTRIEDGI 240 
WD40-rpts                                                                                      

Query      241 EKERTSTDRARLKKFFFAATQTIREILISEDKSAEEDETREKSISKFSRGYNPFRLCQVVTKSKSTCIRKGESDSVLVAY 320 
WD40-rpts                                                                                      

Query      321 EIFESPAPDLINKSLIVEFFVHKRRPPKRLFVVESIVSVMELSQSSQILYVCLMDGTFCAFDLSITDAFFDDNLPWVDSE 400 
WD40-rpts                          (__________________WD 1__________________)                  

Query      401 TNIALRRPTFDSSFLATTVSDATPLIGIALGKSSVGEEITTIDTAGTISYWIANRVEKNELRLLLTAVIRPHPVLKRHST 480 
WD40-rpts                                                                                      

Query      481 SFAVSAFCHVTNPLRFFIGTDTGMLYSMYKSDTSQAIPKIYKTEKEKYGEVTVIAANPSDNTVLIVGFSNGSISVYRTTQ 560 
WD40-rpts                                   (_____________________WD 2_____________________)   

Query      561 ASSIVNIPTADLSTRVTWISWSLTNPSGFYTIHNSNIITYWDLGFKLSPKSVDHRTDSVQVLASDTWLSENAKIGYMAFG 640 
WD40-rpts                                                                                      

Query      641 LSNGDSEVHVLEDPARKNQNETILEVLRRIKNL 673 
WD40-rpts                                       

2 WD40-repeats found in QUERY=C27F2.1 (Len=673):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   341-382      3.60  263.54  0.01735       22.5%     41.78
  WD 2:  Seg 16   510-557      3.49  258.79  0.02008       22.5%     38.60

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  341-382    VHKRRPPKRL-------FVVESIVSVMELSQ-SSQILYVCLMDGTFCAFD
   WD 2  510-557    KSDTS--QAIPKIYKTEKEKYGEVTVIAANPSDNTVLIVGFSNGSISVYR

   WD40 Template    TGECL--RTL-------SGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD