Input parameters:

  Query = C28A5.2 (Len=1218)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C28A5.2, Len=1218):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHFYKYGVLIDQLRDSFEWRVAFLDGSVSDHCCITVPSEKFNFPPTPGATVKAKFEHANSFLPSLVAQCGSFEWFRDVTV 80  
WD40-rpts                                                                                      

Query       81 VNSKVVIFAIVHFSNECLERDPFKINGMDYSIIENENTDFQKIVLPTRVLQTSITSRSNLQNTDTPFIYRIGVCWEPISF 160 
WD40-rpts                                                                                      

Query      161 ENGVTVNWRYYADFPITPIFELYYRETTLPYIAESMVYGVLEGVVIAENDHGALFWTPKMGCAILPSTSLDTPMPSLGSV 240 
WD40-rpts                                                                                      

Query      241 HVILVKRCIPENSFGFSCSYELLSSFRSTEWPNLKVITDQITRKVYIEANASCRSMMENQDFPSMNVPHIGKVFRGLQQY 320 
WD40-rpts                                                                                      

Query      321 RDKLSAGHLYDFRMEFQKEEGSFVPTIVDLCLEEDEMVDCRVVYISNETSTYFAVLDPSSNSFDRFKQSIDYIAIPFRVL 400 
WD40-rpts                                                                                      

Query      401 FCANGVHVKNEELLLNSYKVRVRVPRNRHDVVNAIHVEHVIQSPKDPAYFITNGSVWLRTTVKFQNASRYELLCPLLEQK 480 
WD40-rpts                                                                                      

Query      481 IIDVNGVTAAMSLTQEFTVHAQFVLMERNVPVFVVRQLASTVREHPRTTNYPSRSLNLSYEVSGALARTNPNGQLSAADN 560 
WD40-rpts                                                                                      

Query      561 NIVLINDSISLDHNLPDTGEYPTILNESSFERQLLFDNQSIADSASTSGDFILTESVYESSSAASTCTVIDRNDARFSAL 640 
WD40-rpts                                                                                      

Query      641 NDDSNILISESWLDSTNQHSETTMDTPEIITESFYESTHDQASSRASTVDRLASDVDKISIGRPDYSPPPRRRIFGYSTP 720 
WD40-rpts                                                                                      

Query      721 GDRVRPRNSYGSSSSGSLNGRPKRRAPYGFRQIRNITPHNVLLRDIIYNNINNRKMFVEQNKNAILKCWNRLPLAQVTRT 800 
WD40-rpts                                                                          (___________

Query      801 KKIFCTVIAVESIKFPPSFDDTCIKGLVRFAVVYDDMNVKNTSVVVPIGGNFNNLPKSFQLGDAYKVFHFSSYKDLICRI 880 
WD40-rpts      ______________WD 1________________________)                                     

Query      881 GGFSHGLNGELSRVAPVNCISNPETVNGRYGQRYLRCTVNAARPAISEIESDVFELWTVHGLPGFIIVEKVPLLMNHLNK 960 
WD40-rpts                                                                                      

Query      961 EPINPDVHHQHMYTCIIEPLAGGPVEASILKDVKEGEDICIFWRLVVEFSDTVPLPRLKEKTDKVVPQIRTEPVQSGTFS 1040
WD40-rpts                                                                                      

Query     1041 VDDYGCWETLRINSILAQEKLDRMRAVGDPRVKMIDGPDLRPEIEVRKVDVNTRREKMFAAFDALLEKLPQLHSEGILGY 1120
WD40-rpts                                                                                      

Query     1121 VLEDDLRVKIKKLTPMNDNNHKFTFTFRNGSLEIGVNYLTDMLTRGKIYKVMNEMKKHVPLLKVLSDCIGLNTTYIKKTD 1200
WD40-rpts                                                                                      

Query     1201 AVKMMLHYMYRNELHTYL 1218
WD40-rpts                        

1 WD40-repeats found in QUERY=C28A5.2 (Len=1218):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 35   789-843      2.84  232.05  0.04546       17.5%     25.00

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  789-843    WNRLPLAQVTRTKKIFCTVIAVESIKFPPSFDDTCIKGLVRFAVVYDDMNVKNTS

   WD40 Template    TGEC-------LRTLSGHTSGVTSVSFSPDGK--------RLVSGSEDGTIKVWD