Input parameters:

  Query = C28C12.11a (Len=250)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C28C12.11a, Len=250):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLRRSLFVLDIIALLAIVVFLVFLPADRCLNFEASEQTPRNVDKKCHLHPVHHPNFSFTENLKTNDHLIDPSHQVTICH 80  
WD40-rpts                                                                                      

Query       81 RLKWSHYSFWDSMYLILLPALTCVFLIFYTVLEICEFDVFVGQVQTTGLVIVSAISVIYSIAVITHEKNRIETEWPLLAH 160 
WD40-rpts                                                    (______________________WD 1_______

Query      161 AYVLGAKEGETTVNVPKTWQYSIAMCILSALFKIGRVLVQHFIGDKKFFFDDDSQRDDQNGEPVLLAGSEEVAGTTTILN 240 
WD40-rpts      ______________)                                                                 

Query      241 DSRYSRIETD 250 
WD40-rpts                

1 WD40-repeats found in QUERY=C28C12.11a (Len=250):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   127-175      3.43  256.43  0.02159       12.5%     26.40

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  127-175    TGLVIVSAISVIYSIAVITHEKNRIETEWPLLAHAYVLGAKEGETTVNV

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS---------GSEDGTIKVWD