Input parameters:
Query = C28C12.11b (Len=253)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C28C12.11b, Len=253):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLLRRSLFVLDIIALLAIVVFLVFLPADRCLNFEASEQTPRNVDKKCHLHPVHHPNFSFTENLKTNDHLIDPSHQVTICH 80
WD40-rpts
Query 81 RLKWSHYSFWDSMYCLDLILLPALTCVFLIFYTVLEICEFDVFVGQVQTTGLVIVSAISVIYSIAVITHEKNRIETEWPL 160
WD40-rpts (______________________WD 1____
Query 161 LAHAYVLGAKEGETTVNVPKTWQYSIAMCILSALFKIGRVLVQHFIGDKKFFFDDDSQRDDQNGEPVLLAGSEEVAGTTT 240
WD40-rpts _________________)
Query 241 ILNDSRYSRIETD 253
WD40-rpts
1 WD40-repeats found in QUERY=C28C12.11b (Len=253):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 130-178 3.43 256.43 0.02159 12.5% 26.32
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 130-178 TGLVIVSAISVIYSIAVITHEKNRIETEWPLLAHAYVLGAKEGETTVNV
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVS---------GSEDGTIKVWD