Input parameters:
Query = C33F10.4 (Len=340)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C33F10.4, Len=340):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSDISDDDIFGGFDNRMDTEPIQIDSDDSFDAGAPTSSHTMDRKSIIEKYQKLKEESKKLDDLAVEVRSLFMICKQMEEC 80
WD40-rpts
Query 81 YTKRIDRIVATYGEIRYLHDGTILLLVTIHNITNQPMIDWVISINPTSIFPNSSSSCCQTINVGSLLPGIRKTFQCQLTC 160
WD40-rpts
Query 161 KDPPVLLQLSLLRTYQLGGIVKCFKVKLDPILVTAWNQAQRVERKNMETSFTSTIRLPNSLINLLSGSPDTVISVPQVFK 240
WD40-rpts (________________________________WD 1_______________
Query 241 SILNVPNVQEDHIVMCIPSTSSDNILVKASCAKDGTSYHTLTIGTESSRSLTFLAEQLRLHLIVEMSKLKSRPAKGILIL 320
WD40-rpts ________________)
Query 321 TEMDALSVEELFQTMLAAFN 340
WD40-rpts
1 WD40-repeats found in QUERY=C33F10.4 (Len=340):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 189-257 3.06 241.02 0.03461 20.0% 16.49
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 189-257 DPILVTAWNQAQRVERKNMETSFTSTIRLPNSLINLLSGSPDTVISVPQVFKSILNVPNVQEDHIVMCI
WD40 Template TGECLRT------------LSGHTSGVTSV-------SFSPDGKRL----------VSGSEDGTIKVWD