Input parameters:

  Query = C33H5.7 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C33H5.7, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTMKEVEITAESLAKLTPAKQPNDTTTRVNSLSYGLKGDHMIMSTDDDSMFLYDMNTGLRSRSVNSKKYGCSHVKFASDS 80  
WD40-rpts                     (_________________WD 1________________)   (__________________WD 2

Query       81 MCALHGSTKVDNTIRYLSLTDNKYIRYFQGHDKLVTGINVSPMDDMFLSVAEDKTIRLWDLKTHNCIGLMNLSATPIATF 160 
WD40-rpts      _________________)   (_________________WD 3________________)(_________________WD

Query      161 DPEGLLFAAGLDNNIIKLYDLRSFDKGPFSSFGPLENEDNVEWTAMRFSPCGKYIMICTNSSQLLLVDAFTGLIKFTLEE 240 
WD40-rpts       4_________________)        (_________________WD 5_________________)   (________

Query      241 HQNAQKIPLMASFTPESSHIMVGSSDGYIYFYDVETGEIALKTLAPNNQTCHIAEFSPQHFVAATADTKLTLWCASDELK 320 
WD40-rpts      __________WD 6__________________)(__________________WD 7_________________)      

Query      321 AQAQQS 326 
WD40-rpts            

7 WD40-repeats found in QUERY=C33H5.7 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    16-54       8.63  471.35  2.8e-05       17.5%     49.49
  WD 2:  Seg  6    58-98       8.02  445.98  6.1e-05       27.5%     55.55
  WD 3:  Seg 10   102-140     10.08  531.04  4.3e-06       35.0%     56.40
  WD 4:  Seg 14   141-180      7.45  422.50  0.00013       20.0%     46.83
  WD 5:  Seg 18   189-228      6.94  401.41  0.00024       20.0%     49.38
  WD 6:  Seg 21   232-273      8.36  459.82  3.9e-05       32.5%     56.13
  WD 7:  Seg 25   274-314      7.01  404.12  0.00022       22.5%     49.06

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-54     -LT---PAKQPNDTTT-RV---NSLSYGLKGDHMIMSTD--DDSMFLYD
   WD 2   58-98     -GL---RSRSVNSKKY-GC---SHVKFASDSMCALHGSTKVDNTIRYLS
   WD 3  102-140    -NK---YIRYFQGHDK-LV---TGINVSPMDDMFLSVAE--DKTIRLWD
   WD 4  141-180    LKT---HNCIGLMNLS-AT---PIATFDPEGLLFAAGLD--NNIIKLYD
   WD 5  189-228    -FS---SFGPLENEDNVEW---TAMRFSPCGKYIMICTN--SSQLLLVD
   WD 6  232-273    -GL---IKFTLEEHQN-AQKIPLMASFTPESSHIMVGSS--DGYIYFYD
   WD 7  274-314    VETGEIALKTLAPNNQ-TC---HIAEFSPQH--FVAATA--DTKLTLWC

   WD40 Template    TGE---CLRTLSGHTS-GV---TSVSFSPDGKRLVSGSE--DGTIKVWD