Input parameters:

  Query = C39D10.11 (Len=436)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C39D10.11, Len=436):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFSLPCEGPFGCFDYHGAKLLCIDEAKNLVLISQTDGTDVEKYTLPSSLSKDSYVWVKTCFINGRFLLGLLKSHEDNSFH 80  
WD40-rpts                                                                                      

Query       81 LMTISLNHDQTCTVIKHVPTKIISHGLRVRPLIVSHYSPASINFFQVEAHRSMSQIVFSICNTKVLVKRPILRASDRQSF 160 
WD40-rpts                                                                   (__________________

Query      161 MRQLRQEAEKTNGINGDVEKIVEEVIVEEKIQEITTTTVPLDDEKKMIESVLLLVKVEMDGDIIPTILSTGRRRYGIKIH 240 
WD40-rpts      ______________________WD 1________________________________________)             

Query      241 RTRSIREFRRTISTKFMTRWKCVVPIQNSCEPFLWGNNACIISRDNPTCFYLAHTILNPKSGFIASLLHKLSHRFRAHTP 320 
WD40-rpts                                                                                      

Query      321 VTEPIQSSIRGQGPPPDLIWSNIDILSGMPTFLTMSVQTLKMVKWQVFRDVYGHFNWRKTELDIEGPEGTCRILFKCNSE 400 
WD40-rpts                                                                                      

Query      401 NNNSSDFTIRFQLQKSDGKSHFYHFSIPRIVVQISS 436 
WD40-rpts                                          

1 WD40-repeats found in QUERY=C39D10.11 (Len=436):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   142-227      3.14  244.43  0.03119       25.0%     26.94

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  142-227    NTKVLVKRPILRASDRQSFMRQLRQEAEKTNGINGDVEKIVEEVIVEEKIQEITTTTVPLDDEKKMIESVLLLVKVEMDGDIIPTI

   WD40 Template    TGECL------RTLS----------------GHTS----------------GVTSVSFSPD--------GKRLVSGSEDGTIKVWD