WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: C41A3.1 [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = C41A3.1 (Len=7829) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (C41A3.1, Len=7829): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSACLVGSWAKIPNGEDGHEMAENIFLNRNNIALLPVEKNYLSDFREKHPEVKAALVDGIEYFDDQYFGTGESEAICMDP 80
WD40-rpts
Query 81 QQRMLMQGVIKGLENAGITLEMASEARVAVYTAAWCYDYKDLLPPDQYMATGNSASVMCGRITYFLNSRGAAVGIETACS 160
WD40-rpts
Query 161 SSLVAFHLARQAIQSGETKLALVCGANHVGSRSFHSLYNSHMVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENN 240
WD40-rpts
Query 241 LLIHCECVGSAFNSDGKTPSLTAPNPISQYEVQLEALKNIDKDSVQLVTCHGTGTKLGDQVELTAINRSFKSDIRVMSPK 320
WD40-rpts
Query 321 SSMGHGEGAAGLIGVLQSLYSMQHGIIPNQLHLELPSEDLGEDKSMGFVNEEMELNRVAISSYGFGGTNACAIIEKPEKP 400
WD40-rpts
Query 401 SLVQKESYAESNVLFLSAKSHESLKLQIEEYTQFMAQSDSAMEDILYTVNERKTKYDFRAAVFGKDNEEIARKLQDGDYS 480
WD40-rpts
Query 481 LTNLQESTFEVEFGEGNEKLWLLRMLYEKNETFHSTVDKYCKLAETCGFPEARTALFFPFKLTLTPLTYNVSRLISSMAT 560
WD40-rpts
Query 561 FELLVQYNTLPNKLRGKGLGQIFCLAVAKVITFESAVQLIKGVVAEANLTDILGDIELKSSKIPIEIQHLKSTKKKILPI 640
WD40-rpts
Query 641 HISGELKETAKPNLMTFIVNGEEILELDPVRKVQKLICQLFACGFDPAVKFRGRIVKTPTYSFLKRQFWPEVQTAMTTNI 720
WD40-rpts
Query 721 VDEQTNSSLSDAEIESTVRTIVKQFLDIEEDDINLLETGAVDSLTSIEMVEAFGTAVNQTMPFDLLEAYPTILNIVDFLK 800
WD40-rpts
Query 801 TLVTTVPVTKATTSIHKKTSELSTSDINVIACDYQFAGVEGEKELWDTLLTSRLTTGKISDIRKKQCEGDAGLEVGLLKQ 880
WD40-rpts
Query 881 DISMFDNSFFAIAKDEAEFLDPQHRLLLNAAYNALEKSGLTSIPDADLFLAISAHSEYRALAEKHINELDERLWMGTVHS 960
WD40-rpts
Query 961 MVAGRLAVLMGIRGRAMIVDTTCSSVATALEMAVKSIREGRKFAIVATSQLIQSSKWLYSLKTLLDHHSTNSFSVDGSGF 1040
WD40-rpts
Query 1041 CRSDGVGVIILKTAEKGDSAVIKISSAKSHHCGAVMTPVVSSISQLLEEAGSFSYVEGHGTATSAGDSAESMAYQKLGSE 1120
WD40-rpts
Query 1121 LIMSSVKAQFGHCEVASGLIQLMKVSSIGKHGIIPSIVHNILPSEHIRNNENIRLPFVAEEKQIDRSAIVSFGITGTKTV 1200
WD40-rpts
Query 1201 VTTERVSQLNVDNIQNCYLLPVSAKTKDGLKKACLSLIEMIDNSCESLYDISTTLQKQKTNFKWRTAVVGSSHADVVLKL 1280
WD40-rpts
Query 1281 KQFLTSEHNTSLTNWHISTSHHSIGCSTFFHNIPEFEDHYSMFCHRLRFEPHSNTNSIYHLLAVVYALIRVILKHKLTNS 1360
WD40-rpts
Query 1361 FAVGGFNSLIVLAAVDAAPSHYLNDLLHAFANDDVRMMKRIARDVTISIENVKLLNLNGEPITTARQAVEATIDQKVKNV 1440
WD40-rpts
Query 1441 RLPETTLILSPSRAYEFASQLETIQDYYKLIGEKFTQGGQVDFAGIFGTPIKLIDLPEYPFNRKSFWLPIPDSVPSNEKG 1520
WD40-rpts
Query 1521 EKPLIPKSYEFLLKSQKWQHVQNHVVDSKIVLPGATSIRLVHQLNGKPTVELSNIDFLNKITPSEAPSVVKIEEQDGLEK 1600
WD40-rpts
Query 1601 LVFGETDAISFKLTELQNFNPIPNERLNAEVHHTDNIYERFANSHLTYRNEFQMVDSLKYTMGKGEVRFVSMKDLDILID 1680
WD40-rpts
Query 1681 GTLQAIVGCYFFENTNDNSPFVPFTIDQLSILNGDISQKQLHAVLKYDSSGNFINGDATVYDALGNIILHISNVTFKRLN 1760
WD40-rpts
Query 1761 GQSAPSLTSKTVDSSKITKKVENEDQKRASKNMLHVWFEENFGWTDIDNTTGFFDLGLTSIQAVKLRNAIKSNYPNASST 1840
WD40-rpts
Query 1841 CVFDYPSIDLLSGYLSTLNDPQVTETSTGEDDIQKDLTEDHKPTRLAENPIGVMAAACRLPGGVSSPSELWELLKIGKNA 1920
WD40-rpts
Query 1921 SSRIPATRVPTRNTLISGSKYGNPVEGGNFITQDVTQFDPSFFKISKSEAELIDPQQRLLLECVQECLENSGVIETSNVG 2000
WD40-rpts
Query 2001 VFVGLMEKEYQDMMESSSILAMLGSMAAVIAGRVNYIFGCYGPSVTIDTACSSSLVALEMAINALLDNRCSKVIVAGVNL 2080
WD40-rpts
Query 2081 ILNEKGQGLRTNGKMLSQHGMSLSFDSRASGYGRSDGCVVLMLELAKPNFHYMSTIQSVNVNHGGRSVSLTAPNGVAHKM 2160
WD40-rpts
Query 2161 LLTSVINQSPSLAIDYWEAHGTGTPLGDPIEFNTLSSILQNIIIGSVKASLGHGEASAGTCGLLKLFLMLTYQYVPTLIH 2240
WD40-rpts
Query 2241 FHVLNKDINAGSIRLPIIGEDSELVSAGISSFGVSGTNAAAIAFNDNNKLEPYIPIHKYYILPISAKNQISLDNLEKQIL 2320
WD40-rpts
Query 2321 SVIPLTDVPICNIASALANNRSHFTIRNALIVSNSGIVNSKMEGKPHRVAKKDRYHVKLCDSLLDASLLQYDVINETYTV 2400
WD40-rpts
Query 2401 ASLKNPQSFAMKFAIIKFLTSLSEYIEIVASDGEELLAVLLANGSLKWENFNKTMIELPIGSLLTEFADHDLNSTTSSSI 2480
WD40-rpts
Query 2481 KSYQTQPESHNLDSPMELMKLIMKLYITGYDVDWATVYSPVEQFIALPNYQFNKQTLWFEERLEIVDHYLIGTIDEESED 2560
WD40-rpts
Query 2561 TLILKNQISELRHPQFFKGKPLDVGTMSEIAIEALKIRNEIPFSIQNLKTELITLTKPAWLETNVTRNEDDEGFNVSAYI 2640
WD40-rpts
Query 2641 DGQRLFSLNASSVEIQNIEVPAVEVQIPDKVVYLKECPNAVIRRHRNMVYVDSRAEQSPFRTANIVLNEIIGFAPTPSDM 2720
WD40-rpts
Query 2721 FIEILGVLPSVHYMVQVDDGALWQFQMISQDKRVLSNIYVLKDAKGLEIPTIRMHKKSTLLSSQEASIVAAKTLQMAVRH 2800
WD40-rpts
Query 2801 KVCLAVGDVIESGLDIDESQLSTGFSELGIDSLATVDLLNRLNQKYFPEIELTTSDLFDNPSIIDLSIMIEQLLNEKGIT 2880
WD40-rpts
Query 2881 EPSEPNTPKTSLRGRKLSIPAVRAQVLAQIEFVENYNSKQKEVQAEAPSSSSECSNHLEESDATVDRTEIRRKVSLAVFD 2960
WD40-rpts
Query 2961 LATETLSAEDLQSKGFTELGMDSLSIVDFVNRLNDKYFPDDEITASDIFDYPTVDELSDHIVRKKSSSVPPAASEIMKET 3040
WD40-rpts
Query 3041 MNGISTSVDAEHTKLENLSQSFMLLENQNSINPTLKMIWSNQTIKLVKPSDGNFLFELNANGGQEKEIQKHFTGPNNIII 3120
WD40-rpts
Query 3121 DLKGFHEGSTETLYMSLLNLVKSISKLEIQCRFGVSQEFGLGNSISRAFMKTVAAEKNPLISFAWYQNVQQVSFVDSDSP 3200
WD40-rpts
Query 3201 ITGNWLITGGLSGIGLEIGKFIANNGAENVILISRRQPTAKALRDILSTELTHIGLARKTIVLKLIKNISAKLIVFQSFK 3280
WD40-rpts
Query 3281 LSFSTKKYISDLFSKKVTFFYNLLQSKCFSKHFHWLFEWLEVYLIKQWTVHTIAADINDKEKLIRELTKLNVGITGIIHS 3360
WD40-rpts
Query 3361 AGVLKDSKIERQNKESFNQVFTPKANGFHVLEEIEKHFNYKIENFIMMSSFTAACGNEGQLNYGVSNAYLEYQVQRRRRQ 3440
WD40-rpts
Query 3441 GKSGCAIQWGNWIDTGMATDENVRKFLANLGFLGQHNKDALKYLRACILTKPELIMVANIDWNVILKNRKDLPKDLINTG 3520
WD40-rpts
Query 3521 ILPFEDFTGKMNESEFPLSNGDFEKVSMNFSVEDEEEVLELIKEKVSSILMCSPTKLKNNKNIMDMGLDSKLIVEFLNFI 3600
WD40-rpts
Query 3601 NSTFKISVNLSDAYNHPTLEKLAAHIFEQMTIVDHPVNSVKSEEIFKSTDFCPIFGINIFFDNKNDFDKAKSTAVKLLEN 3680
WD40-rpts
Query 3681 GEQLPTAGKYAVSVVGKSIRDVVSKIKEAAPQQIKLCQESSKCVLMLTGQGSQYPMMGRQLVENYEIFRTTLQSCLKKCD 3760
WD40-rpts
Query 3761 EYLQGDVSLWEILFNTDHYKLLQLTKHMQPIMFCFGYATAQLWLSLGIVPDYYLGHSVGELVAGVLAGIMSIEDGLRLIV 3840
WD40-rpts (__________________________________
Query 3841 ERGKAMENIAGLGALLAVQREIADEVLRKFKVSVATINSPKQVVFAGTKSVLDAALAFVKGQGKQATYVNQQYPFHSNLI 3920
WD40-rpts ____WD 1_____________________________________)
Query 3921 QETHLVSLRQCLADIKFSAGRTPLVSNVTGQIINTFSEAYIVKHTVSAVKFVDCVETLQAKGVTVWIDAGSAAVLATFVK 4000
WD40-rpts
Query 4001 RIIQPTELSKHRIVQTCKEKESDVDNLVQACLELEQSGLPISWTTLYGCGRNADERLVEFPMTHNDIIKNDEFELLEGHQ 4080
WD40-rpts
Query 4081 LNGKIVVAGAYQLFKIDQLVKLKAAGMELMLKNVKFLKPWYIEDNREYQIQWNSDMTIELIVNSVIVCSLEVEPQNSVLK 4160
WD40-rpts
Query 4161 LETISENEKPFEVHDFYETLFRNGLQYDSGFRRIESARRSDKRCFSQIKSSPFAWPLIDSAMHSITASVVPRRPDCYFLP 4240
WD40-rpts
Query 4241 VAMGSVTMKDTNSFTLPNLHAQTVITSETDKFIQVNVALLAGDTPICEVRNMTIVVLKTEPVHTRIPNSIETVETPPKSE 4320
WD40-rpts
Query 4321 IEIVGFDISLPYNQISENSENWQHLKTNTVKQKLHNRSLKQDHARVALLDSDARYWDPEYFGIRPSEAKFIDPQQRLLLC 4400
WD40-rpts
Query 4401 SVAKLLDSLLITSLTSNTGVFIGCSANEFSHIVYAYGYKDPRAEWSGGTSNSALAGRIAHWLKLKGPVVTLDTACSSSFY 4480
WD40-rpts
Query 4481 ALSAACDALRTGQCEYAIVGTVNLVMHEMTTDVLQNAKMTVDDFCKAFDVDANGYKRSEAVCSMLLTKSPNIDSVATITN 4560
WD40-rpts
Query 4561 YATGHNGTSSSLFTPNGLSQLEVMQRATNPLEKILEIQTHCTGTKLGDPIEINAISKLVSSACKIGSVKSNIGHTEGSSG 4640
WD40-rpts
Query 4641 LVSLCSSLMSFRSKYRVAQLHLKCPTNSIKTNKMICRFIGEDADENNSILINNFGFTGSNCSVVLKPKNAISEHFVSSEV 4720
WD40-rpts
Query 4721 FYPILLSSHSAKSLQKYVQVLCEFISNSAKSLHDIMMSLFQKKIHVHRQFIIFNFKRKIAVTSLDGFVEVRDERLEKLKH 4800
WD40-rpts
Query 4801 PCSVFLKEGVVHFDKDKSFQRVDLPSIVFNNTLHWALDSYRDEIDRHESQQMSFKNIFYEKVLLETPMPQQNPISKVVCI 4880
WD40-rpts
Query 4881 GRLDLIPKIEIDEVSSFANGIIVFHPISNSIFEYLKLAKVWSLISRNQNVFIIICCFENGTSHTEWTGTLRSLASEKMIP 4960
WD40-rpts
Query 4961 YKFVSIDKVDALKLEFNHEYMFEAIFYSKRGRYVERLRKVNPTFKFAPQYEKCLISGGTGGIGSAIINELKPKSSVIITR 5040
WD40-rpts
Query 5041 KNIASEDGKTFLSSDITRLDISHKFNYVFHLAGIVNNSLHENVKRDSLDEMVSIKLQGAKNLMKCCDETSHFVFSSSIAN 5120
WD40-rpts
Query 5121 VLGSYGQSNYAFSNGLVTSFLETSSTKSTIIHWGPWKDVGMLAQPERREIVKQIESNGWKLLPNQDAISVFYTQFMETHE 5200
WD40-rpts
Query 5201 QIIVFDGDFDTIVARQPHLQKLLSEVVEKTKVKEEIKKKSLNFEEIFFEIVGITDISSKLNIPFMDLGIDSLCMENLRYS 5280
WD40-rpts
Query 5281 LNKNFDLELTVSEMFENATYQKLQTYVETLRKAKHSESLSHDRVSSQVSNKEDDTRVAVIGWSAEFSGSSNIHEYWENLM 5360
WD40-rpts
Query 5361 DGICSTGNNKYLLKNPFGFDNKFFNLTDEDARVLDPQVRKFIQHAYLALENSGYVKQKHELRCGVFAGAEPSDYGRADDH 5440
WD40-rpts
Query 5441 DDAMRKLFVMNMNSYLASYASYCLDLKGEAVSVYSACSTALVAVANAVKSIQSGSMDYALVGAASIAEVSGALSGFDDQK 5520
WD40-rpts
Query 5521 KTMFSKSGVCRPFDKDSEGIVRGSGVGCFVLKRYSQALLDNDNVHFVIKDFAINNDGHSRASFMAPNPAGQLKCMTDVLA 5600
WD40-rpts
Query 5601 RFTNKEKERISFVECHATGTTLGDTIEMNSLRTAYSFKNKLAIGSCKANIGHAYAASGLAALVKCAKMLQTGIIPPQVNF 5680
WD40-rpts
Query 5681 SEFRDGMGQFFTVNGKKSTISQNSLISIDSFGIGGTNVHMVIEFPARSQEVVKISSENLILYDMIPISAKTEYSLDHTSE 5760
WD40-rpts
Query 5761 AISKYLQTDTNKIAQCSSTFIHSRVPMDSRTYLSVNNNNELLKIRTNKKTWFNGKSPKIALFFAPQGIQFTNILPNEYLK 5840
WD40-rpts
Query 5841 NSAYRREVEYLCELASSFGIPSLEGILYPTKNFDHLIHATQFAQIAIFVQCMAIFKAIKNVFNPTCLIGHSVGEYAAAVI 5920
WD40-rpts
Query 5921 SGALKTEEALKLLIKRSELIGKTEKARMLMVWNYEKQLPSHVHVSAIIDANTKCVVGPVETIDNLEKYFINNHIKYRNIE 6000
WD40-rpts
Query 6001 TKHGFHSKMFHCISKEFEFFCESFATKVPLIPMISSITGSEIKIFDSKYCTMHLTNPVNLELVVDHIMKLDIDIIVEVGP 6080
WD40-rpts
Query 6081 TGVLSNLLAKRNSKIVVVPTCGTKKHPKISLGECIGQLWSNGVDIRKLTPKLAVDGQVPGYCFDERQFGEKNQKISQKLN 6160
WD40-rpts
Query 6161 RFSYYKESWKPVSSELEETKPVRFTVCDGSLNGISEPVLVYLLRKSEDIHKNYFDVELFLKSSPRCSTVVFVGMDNSPSV 6240
WD40-rpts
Query 6241 HLSLGLIRCYQLVSRIDLKYVENFENIAMSIVIQKVLTANGLYFRIDSTGLCKHGFRTTEIPSRLHPVSRGHALVFGANG 6320
WD40-rpts
Query 6321 FIGSIVFRLLQEMGMNVIPISRASIPSCDITNIKDVQNVFKSLGFKKFSVVINCVGVETSAKMNKTSLEQEIVLSPKTFG 6400
WD40-rpts
Query 6401 SVNILKCLEEFSIEVDKLVNFSSLSSVVPLLGNFDYASANCFVEALTKQGSKYIKQFLTLSLPPLEGSRMYESSTSSTKH 6480
WD40-rpts
Query 6481 NLSQILMFQEELTNVLKTAFESNMNGIVFVSSVNPADIATKSIAFHRTDENGSEVKAVESLKLPKSTSCEFVIAEIWKET 6560
WD40-rpts
Query 6561 LGISILNDANPNFFSLGGDSLSALQVVWKVQKKTDRIVDVNDLFDNPTLQEFTKFVKNLTTEKFAGNTNDKISYDAIPLT 6640
WD40-rpts
Query 6641 NSQTQMFMLRQIDTTSKYNLIFKITISYETKFVWEFLKYSLHSLIAYQPSYRTVFKSGNSPYQYICSLTESFHDFDKRCN 6720
WD40-rpts
Query 6721 LNNAISHEPNHLFEIGKSTPLRVRVAEDCDNSRIHIVFNQHHILTDGWSMTVLSDTVSSLYAAYRGETSFPSKTKQTISQ 6800
WD40-rpts
Query 6801 VAMGTKSSGDIKEALEYYQNTYHTIIPYDSETGNTSPSYVRISKLIPSKIWQKLVGLSKLYNTTMYNLALSVFCDAVRSF 6880
WD40-rpts
Query 6881 TGQADILLAYAISGRNADNSELIGYFMNNALFKTSLPFEILRLEEILNIVLNSLEKSRSFATIPFYQMVEQNRKLNEISL 6960
WD40-rpts
Query 6961 FFNFRQKLDYPTVSMFGAKCEIEHLSLNNAFDFSFTIDETPTGSLITVDFDKSKYLDTTVHMFANIFLKKLNNLRNMNTT 7040
WD40-rpts
Query 7041 IPIRRTDFPSTLFQKGLFTSWRLFTEPALLLSTNTVSYSDLAEKIENISKDIQKQLQIAKATSVREDELVGLDCKNSYFA 7120
WD40-rpts
Query 7121 LLACVFLGLPYAPIDPTWPEPRQLFVKSKVSFTLENCFSCNLKLRNFNSRTQFGSIYSIFTSGSTGVPKGVLMAEQSVSS 7200
WD40-rpts
Query 7201 FMTSASKQCMFRSNIRVLDSVKQVFDVSVSNIIGSVLNGGVLISSEHSTTITDQLQKCQYAFLPAAVFNGFTDKTMSRLE 7280
WD40-rpts
Query 7281 SIETLTIGGETVSDVVIETAMKKFPRLRTIQIYGPTETCIWSLTNKCKVSTLNIGSALGDSLSNETCTICNNSVRGNVQV 7360
WD40-rpts
Query 7361 KGISLARGYITSAPHGTPFSDIYSTGDIVDSKLNSLQYIGRMDSQVKCKGVRINISEIEKELILCLGLLQIVVLYSNQML 7440
WD40-rpts
Query 7441 IAFIVDQKSKLLHDSLVKTLKNRTQIPDYFVQINKMPLNSSGKVDKSLLLQAFENIRKSYKREIVVMKNSLEEKVINVFS 7520
WD40-rpts
Query 7521 KILGRNVAPTDKFESIGGNSLNAIQIAHRLAEELKIEIKAHEILQSNSLKTFCNTLKNSVQKPISKVPNVITKLREVPNS 7600
WD40-rpts
Query 7601 KFNIYLVHAIGGTIYPYYSFLQIFPKDISLYGIEFDLKYPSNDLRELAHFYAEEIAAHAGNKRIFVMGHSMGGIMSREIV 7680
WD40-rpts
Query 7681 AELKIWGYDIPFVMLFDSWVLRTNELDIENIKQFITYVFSGLPDSEHRINRAIKLAQLLREYKTSVSDTKLYLFKSKQLG 7760
WD40-rpts
Query 7761 DAAFKKAVRSDLNEELSRSMTCNGFDELSLQPVETYLIDGDHESCLKAENLKKVKDLVLAPFQPYFEQA 7829
WD40-rpts
 1 WD40-repeats found in QUERY=C41A3.1 (Len=7829): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 73 3806-3886 3.28 250.29 0.02607 20.0% 30.47Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3806-3886 LGIVPDYYLGHSVGELVAGVLAGIMSIEDGLRLIVERGKAMENIAGLGALLAVQREIADEVLRKFKVSVATINSPKQVVFA WD40 Template TGECLRTLSGHT---------SGVTS------------------------VSFSPD--------GKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |