Input parameters:

  Query = C42C1.4a (Len=1259)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C42C1.4a, Len=1259):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTSGSLEKEDWLDLGDLNNAPTFSLEDALNDTENLSDPFLDEQFAVDGEFGSVSNLTESTAHSPDSHSLTYKLDSAFVI 80  
WD40-rpts                                                                                      

Query       81 QPHQVISHQILSNEKKTGRVIAVAERNGWIAVVTSKGQLLLFDLNGNLNQFHRGDETMGGASCVTFSLDGKFLAIGLQKG 160 
WD40-rpts                                                 (___________________WD 1_____________

Query      161 AIKIMTIDNKLYHMIDEGGQPGQGIIQVIYTKDNHTVLTLDNGGSFYECTISKPWLQKRKDKLRCHVSGCNGEVISMKMM 240 
WD40-rpts      _____)                                                                          

Query      241 PGDVIALLSVHRLIFYILKPRGQILGIFPIKFEYQFPPACSFWLGTPKTAINSPLNSLYSTTLKDFRVCISRGNKLAILR 320 
WD40-rpts                                                                                      

Query      321 IHANNFFTKYRRATVIRQLELPCSLVNIHWMSNHMIVGIDSFGAVWQIDPEKGTAKKQDIEDLQLVFSTPILKGSATGGR 400 
WD40-rpts                                                                                      

Query      401 VSEAVKAVAEFACYQSVTSATSTSERLIVLAHDGLKYLEKVHEWEQLERYKERNDVISASLYLLDVCRDKVRASEMFKRE 480 
WD40-rpts                                                                                      

Query      481 SHSLLAEKAHSLLTETVAGVGGGALSDLLAHYRKYIRVLLKVCITGRLLDFLYIACWDRLSMDSLSKTVFLDHLDEYVLD 560 
WD40-rpts                                                                                      

Query      561 GALIDPPPPLVNEYLQHLAAEGHFSQFQSAVVRFPIHTLDLHTVMSICKQNSIYDGIIYVNNKALNDYITPLENMLAEMR 640 
WD40-rpts                                                                                      

Query      641 TFAHRDMFSDSEQILGNKVLVYLNCCLSGMAYPFGALDEENRKRVPLETFRCISSLKEKDGSESDEQYPYLRLLLKYDPQ 720 
WD40-rpts                                                                                      

Query      721 QFLNVVSTCADVLLFQLDNRLQRFVDTIGQLCVNMKCELSLIHFLNLVVQLSERVLIAPPIEHVQDSVITLLRMSPWEHS 800 
WD40-rpts                                                                                      

Query      801 STENSILTALYHVTPDDKRRIIRAAQNPMRPTILSFLYLNDRKFEDLIKCYLESNSTEVYSSIGGILKEAELTDDESAEF 880 
WD40-rpts                                                                                      

Query      881 RKYLMSIMENLFKIDGWLCANLINDHFRDVIASMAKSNEEERKMVFPVLAGIAQLRKVSNQPSFCNDDELDEKLFGIVFE 960 
WD40-rpts                                                                                      

Query      961 GICKGWPSWMPSSEDPEYADRQLIALFPFWLQLAASTDFCLNIAVGNEHCVRTVIRLLEARQHLERAFDLLFEQLEKNKD 1040
WD40-rpts                                                                                      

Query     1041 HDNIMSEWLDETMKFCSRQSSKNETSDRMMRVFQFVSERVAEFEEDSEKQKKMDESLRTMCRQILSTGTKYAKQLVDKLL 1120
WD40-rpts                                                                                      

Query     1121 ESPSFVESTFEDNGGLLLDIMASCEYEAELYQEMIYLIREENLSLAQKLEMEVSRRAPLMHNPNCITCEQPMHKSGYVFR 1200
WD40-rpts                                                                                      

Query     1201 CGHFQHIECSTNIDRTCTCDGIPDRLVVPREKPDRPEKRNIFENWDTKLNCRVFPKDSS 1259
WD40-rpts                                                                 

1 WD40-repeats found in QUERY=C42C1.4a (Len=1259):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   124-166      4.56  302.90  0.00514       32.5%     42.12

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  124-166    LNGNLNQFHRGDETMGGASCVTFSLDGKFLAIGLQKGAIKIMT

   WD40 Template    TGECLRTL---SGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD