Input parameters:

  Query = D1054.15a (Len=494)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D1054.15a, Len=494):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSASVSDPYEQMPAAPTDDDLEDKPEADKKALLNQVFKSLKRAQDLFYHDYAQPPPMPEENDSLIRSMKRKHEYGNVIKK 80  
WD40-rpts                                                                                     (

Query       81 VEEMKVRRENEMLALPTSQPMHGTGSVIASAGTPLAITDGSGKLVNQQQGSAKSGTLLPLVPLGNSSKGEDNTTRSLLPS 160 
WD40-rpts      _________________WD 1_________________)  (______________________WD 2____________

Query      161 KAPMMMKPKWHAPWKLYRVASGHTGWVRAVDVEPGNQWFASGGADRIIKIWDLASGQLKLSLTGHISSVRAVKVSPRHPF 240 
WD40-rpts      _________)   (_________________WD 3________________)   (_________________WD 4___

Query      241 LFSGGEDKQVKCWDLEYNKVIRHYHGHLSAVQALSVHPSLDVLVTCARDSTARVWDMRTKAQVHCFAGHTNTVADVVCQS 320 
WD40-rpts      _____________)   (_________________WD 5________________)   (_________________WD 

Query      321 VDPQVITASHDATVRLWDLAAGRSMCTLTHHKKSVRALTIHPRLNMFASASPDNIKQWKLPKGEFMQNLSGHNAIINTLS 400 
WD40-rpts      6________________)   (________________WD 7________________)   (________________W

Query      401 SNDDGVVVSGADNGSLCFWDWRSGFCFQKIQTKPQPGSIESEAGIYASCFDKTGLRLITAEADKTIKMYKEDDEATEESH 480 
WD40-rpts      D 8________________)   (_____________________WD 9____________________)          

Query      481 PIVWRPEIVKKKAY 494 
WD40-rpts                    

9 WD40-repeats found in QUERY=D1054.15a (Len=494):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    80-119      4.44  298.19  0.00595       15.0%     23.37
  WD 2:  Seg  4   122-170      5.30  333.65  0.00198       17.5%     26.93
  WD 3:  Seg  7   174-212     10.00  527.71  4.8e-06       37.5%     54.33
  WD 4:  Seg 11   216-254     10.14  533.43  4.0e-06       42.5%     56.07
  WD 5:  Seg 15   258-296      9.76  517.95  6.5e-06       35.0%     56.73
  WD 6:  Seg 19   300-338      9.48  506.21  9.4e-06       25.0%     54.06
  WD 7:  Seg 23   342-379      7.90  441.19  7.0e-05       30.0%     50.78
  WD 8:  Seg 27   383-420      8.65  471.82  2.7e-05       37.5%     55.55
  WD 9:  Seg 31   424-470      7.38  419.49  0.00014       27.5%     54.39

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   80-119    --KVEEMKVRRENEML--------ALPTSQPMHGTG----------SVIASA--GTPLAITD
   WD 2  122-170    GK-----LVNQQQGSA--------KSGTLLPLVPLGNSSKGEDNTTRSLLPSKAPMMMKPKW
   WD 3  174-212    WK-----LYRVASGHT--------GWVRAVDVEPGN----------QWFASGGADRIIKIWD
   WD 4  216-254    GQ-----LKLSLTGHI--------SSVRAVKVSPRH----------PFLFSGGEDKQVKCWD
   WD 5  258-296    NK-----VIRHYHGHL--------SAVQALSVHPSL----------DVLVTCARDSTARVWD
   WD 6  300-338    KA-----QVHCFAGHT--------NTVADVVCQSVD----------PQVITASHDATVRLWD
   WD 7  342-379    GR-----SMCTLTHHK--------KSVRALTIHPRL----------NMFASASPD-NIKQWK
   WD 8  383-420    GE-----FMQNLSGHN--------AIINTLSSNDDG-----------VVVSGADNGSLCFWD
   WD 9  424-470    GF-----CFQKIQTKPQPGSIESEAGIYASCFDKTG----------LRLITAEADKTIKMYK

   WD40 Template    GE-----CLRTLSGHT--------SGVTSVSFSPDG----------KRLVSGSEDGTIKVWD