Accession: D1054.15b - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = D1054.15b (Len=438)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D1054.15b, Len=438):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPEENDSLIRSMKRKHEYGNVIKKVEEMKVRRENEMLALPTSQPMHGTGSVIASAGTPLAITDGSGKLVNQQQGSAKSGT 80  
WD40-rpts                             (_________________WD 1_________________)  (______________

Query       81 LLPLVPLGNSSKGEDNTTRSLLPSKAPMMMKPKWHAPWKLYRVASGHTGWVRAVDVEPGNQWFASGGADRIIKIWDLASG 160 
WD40-rpts      __WD 2_______________)               (_________________WD 3________________)   (

Query      161 QLKLSLTGHISSVRAVKVSPRHPFLFSGGEDKQVKCWDLEYNKVIRHYHGHLSAVQALSVHPSLDVLVTCARDSTARVWD 240 
WD40-rpts      _________________WD 4________________)   (_________________WD 5________________)

Query      241 MRTKAQVHCFAGHTNTVADVVCQSVDPQVITASHDATVRLWDLAAGRSMCTLTHHKKSVRALTIHPRLNMFASASPDNIK 320 
WD40-rpts         (_________________WD 6________________)   (________________WD 7______________

Query      321 QWKLPKGEFMQNLSGHNAIINTLSSNDDGVVVSGADNGSLCFWDWRSGFCFQKIQTKPQPGSIESEAGIYASCFDKTGLR 400 
WD40-rpts      __)   (________________WD 8________________)   (_____________________WD 9_______

Query      401 LITAEADKTIKMYKEDDEATEESHPIVWRPEIVKKKAY 438 
WD40-rpts      _____________)

9 WD40-repeats found in QUERY=D1054.15b (Len=438):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    24-63       4.43  297.62  0.00606       17.5%     34.89
  WD 2:  Seg  6    66-102      5.98  361.58  0.00083       22.5%     33.42
  WD 3:  Seg  9   118-156      9.09  490.03  1.5e-05       37.5%     54.59
  WD 4:  Seg 13   160-198     10.09  531.45  4.3e-06       42.5%     56.16
  WD 5:  Seg 17   202-240      9.68  514.40  7.3e-06       35.0%     56.42
  WD 6:  Seg 21   244-282      9.42  503.88  1.0e-05       25.0%     54.12
  WD 7:  Seg 25   286-323      7.85  439.06  7.5e-05       30.0%     50.88
  WD 8:  Seg 29   327-364      8.68  473.07  2.6e-05       37.5%     55.80
  WD 9:  Seg 33   368-414      7.45  422.40  0.00013       27.5%     55.17

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   24-63     KVEEMKVRRENEML--------ALPTSQPMHGTGSVIASA--GTPLAITD
   WD 2   66-102    -GK--LVNQQQGSA--------KSGTLLPLVPLGN--SSKGEDNTTRSLL
   WD 3  118-156    -WK--LYRVASGHT--------GWVRAVDVEPGNQWFASGGADRIIKIWD
   WD 4  160-198    -GQ--LKLSLTGHI--------SSVRAVKVSPRHPFLFSGGEDKQVKCWD
   WD 5  202-240    -NK--VIRHYHGHL--------SAVQALSVHPSLDVLVTCARDSTARVWD
   WD 6  244-282    -KA--QVHCFAGHT--------NTVADVVCQSVDPQVITASHDATVRLWD
   WD 7  286-323    -GR--SMCTLTHHK--------KSVRALTIHPRLNMFASASPD-NIKQWK
   WD 8  327-364    -GE--FMQNLSGHN--------AIINTLSSNDDG-VVVSGADNGSLCFWD
   WD 9  368-414    -GF--CFQKIQTKPQPGSIESEAGIYASCFDKTGLRLITAEADKTIKMYK

   WD40 Template    TGE--CLRTLSGHT--------SGVTSVSFSPDGKRLVSGSEDGTIKVWD