Input parameters:

  Query = D2013.8a (Len=1087)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D2013.8a, Len=1087):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNDRVKIRWKEAKERIGNAYHDYGRLCAAHPKACLSMSLLTMIVLSYPTITRLRLPVSTPIDVFWSEHLHVNDKIAPFWI 80  
WD40-rpts                                                                                      

Query       81 NENPASYIQQFIVSTTISPWNATEMGPEHAVRAAIATAFRIRQILLAEPAVEELCLRLANQRQDSSWPFRSKSLCVVLSP 160 
WD40-rpts                                                                                      

Query      161 ASIWYNNLQKFREDDDTITTVFNEHCKSTFCMRDLLLGAPIAATGIKQKYQTNRKRKIEFAVTMFFARYSKKVIQGIREK 240 
WD40-rpts                                                                                      

Query      241 LQKEFELVDTPPNDQRTFVQVYFHPLKTFSDYIPLISTYFVCMIYVYYSSRKIQMVASRWGLAFASSFTVASTLLMTTGI 320 
WD40-rpts                                                                                      

Query      321 CAHLDLSTTTWGSEVYPYIALIMGLENTLCITRSVVYTSPSLDVSSRIAHGLSQEGYKLTKYYILELLALLIGFLTRISD 400 
WD40-rpts                                                                                      

Query      401 IQEFCQFSVICVTVDFYMQLFFYAPCLTFDLQRLGLEEKRKFAEILLYEEIPRLKNYAPVSCPMRKIWPKLFVMKKMQKR 480 
WD40-rpts                                                                                      

Query      481 RVSDSGIEDVMKNDEQRRLLISSEFDSKDDGDVQEPRPEDSVRMKIMYFITRTRIVQRTILVVFAIWTVFLVFFVGSRQL 560 
WD40-rpts                                                                                      

Query      561 GMESNLTNQSIESLTRSHRILSTANLQYGNWQRRTYKWWPPVAHEYNISLNSRYVTFLPPIVINAIVHPTDILLQNVEKT 640 
WD40-rpts                                                                                      

Query      641 HVNVPNEEEDAPILRSRIDWLEMQLKMYLAAFWLLLITTVISFFAYVFLIDRWKLRGVKQIQEQQMSETTTDSSETVKNF 720 
WD40-rpts                                                                                      

Query      721 VDTLPIVYQGHRFPIESVAIDPEDTSTFVSCCQEGVVYVWNTQTGQRTLRINRLRAVPEKGKEIPSAPKIWAIAKRNDIV 800 
WD40-rpts       (_________________WD 1_________________)          (__________________WD 2______

Query      801 ILGCCDGSIEIASISRNKLIGLYTKSTIGASHVVCREDDVAVVRLDGSIEFLRIDYDRTDGTIRVRKIELLKSVRAHQKP 880 
WD40-rpts      ____________)   (_________________WD 3________________)            (____________

Query      881 VCRIAIWKSQLITSSFDRSIKMWNWAENPEQIDISNVFLAHNSPVVNLAVDEATSIMYSSCEEGVICWWNLNTGELIRTN 960 
WD40-rpts      ____WD 4_______________)(____________________WD 5____________________)   (______

Query      961 DNNYTWAFQLATSSDYLLGFYGSSQLYMWNVENGQLACRVSDALGDGTSEDTLYTVGSSGVVSFDDQVAATTSSDSVTFW 1040
WD40-rpts      __________WD 6_______________)   (_____________________WD 7_____________________

Query     1041 DLKHRAIIGKVKLNGKISSMRKNTSHSVLCGVDNSMYSVTVPLVRFK 1087
WD40-rpts      )                                              

7 WD40-repeats found in QUERY=D2013.8a (Len=1087):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   722-761      7.29  415.70  0.00016       27.5%     51.84
  WD 2:  Seg 25   772-813      5.12  326.00  0.00251       12.5%     36.09
  WD 3:  Seg 28   817-855      3.87  274.42  0.01241       15.0%     50.60
  WD 4:  Seg 33   868-904      7.06  406.24  0.00021       25.0%     50.63
  WD 5:  Seg 37   905-950      7.95  443.05  6.6e-05       22.5%     47.01
  WD 6:  Seg 40   954-990      6.69  391.01  0.00033       20.0%     51.51
  WD 7:  Seg 44   994-1041     4.77  311.84  0.00390       25.0%     44.17

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  722-761    -D--T------LPIVYQGHRFPIE----------SVAIDPEDTSTFVSCCQEGVVYVWN
   WD 2  772-813    NRLRA------VPEKGKEIPSAPK----------IWAIAK-RNDIVILGCCDGSIEIAS
   WD 3  817-855    -N--K------LIGLYTKSTIGAS----------HVVCRE-DDVAVVRLDGSIEFLRID
   WD 4  868-904    -I--E------LLKSVRAHQKPVC----------RIAIWK-SQ--LITSSFDRSIKMWN
   WD 5  905-950    WA--ENPEQIDISNVFLAHNSPVV----------NLAVDE-ATSIMYSSCEEGVICWWN
   WD 6  954-990    -G--E------LIRTNDNNYTWAF----------QLATSS-DY--LLGFYGSSQLYMWN
   WD 7  994-1041   -G--Q------LACRVSDALGDGTSEDTLYTVGSSGVVSF-DDQVAATTSSD-SVTFWD

   WD40 Template    TG--E------CLRTLSGHTSGVT----------SVSFSP-DGKRLVSGSEDGTIKVWD