Input parameters:

  Query = D2013.8b (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D2013.8b, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQLKMYLAAFWLLLITTVISFFAYVFLIDRWKLRGVKQIQEQQMSETTTDSSETVKNFVDTLPIVYQGHRFPIESVAIDP 80  
WD40-rpts      (__________________________WD 1_________________________)  (_________________WD 

Query       81 EDTSTFVSCCQEGVVYVWNTQTGQRTLRINRLRAVPEKGKEIPSAPKIWAIAKRNDIVILGCCDGSIEIASISRNKLIGL 160 
WD40-rpts      2_________________)   (______________________WD 3_____________________)         

Query      161 YTKSTIGASHVVCREDDVAVVRLDGSIEFLRIDYDRTDGTIRVRKIELLKSVRAHQKPVCRIAIWKSQLITSSFDRSIKM 240 
WD40-rpts            (_________________WD 4________________)(________________WD 5______________

Query      241 WNWAENPEQIDISNVFLAHNSPVVNLAVDEATSIMYSSCEEGVICWWNLNTGELIRTNDNNYTWAFQLATSSDYLLGFYG 320 
WD40-rpts      _)       (_________________WD 6________________)   (________________WD 7________

Query      321 SSQLYMWNVENGQLACRVSDALGDGTSEDTLYTVGSSGVVSFDDQVAATTSSDSVTFWDLKHRAIIGKVKLNGKISSMRK 400 
WD40-rpts      _______)          (__________________WD 8_________________)   (________________W

Query      401 NTSHSVLCGVDNSMYSVTVPLVRFK 425 
WD40-rpts      D 9________________)     

9 WD40-repeats found in QUERY=D2013.8b (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-57       7.05  405.89  0.00021        5.0%     47.25
  WD 2:  Seg  5    60-99       8.07  447.94  5.7e-05       27.5%     52.15
  WD 3:  Seg  9   103-151      6.59  386.90  0.00038       15.0%     53.39
  WD 4:  Seg 14   167-205      6.37  377.70  0.00051       22.5%     43.32
  WD 5:  Seg 18   206-242      7.67  431.48  9.5e-05       25.0%     51.78
  WD 6:  Seg 22   250-288      8.56  468.41  3.0e-05       20.0%     47.55
  WD 7:  Seg 25   292-328      7.33  417.25  0.00015       20.0%     52.98
  WD 8:  Seg 30   339-379      5.76  352.52  0.00110       17.5%     36.52
  WD 9:  Seg 33   383-420      4.37  295.30  0.00651        5.0%     46.25

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-57     MQLK--MYLAAFWLLLITTVISFFAYVFLID----------RWKLRGVKQI-QEQQMSETTTDSSETVKN
   WD 2   60-99     -DTL--PIV-----------------YQGHR----------FPIESVAIDPEDTSTFVSCCQEGVVYVWN
   WD 3  103-151    -GQR--TLR-----------------INRLRAVPEKGKEIPSAPKIWAIAK-RNDIVILGCCDGSIEIAS
   WD 4  167-205    -GAS--HVV-----------------CREDD----------VAVVRLDGSI-EFLRIDYDRTDGTIRVRK
   WD 5  206-242    -IEL--LKS-----------------VRAHQ----------KPVCRIAIWK-SQ--LITSSFDRSIKMWN
   WD 6  250-288    -IDI--SNV-----------------FLAHN----------SPVVNLAVDE-ATSIMYSSCEEGVICWWN
   WD 7  292-328    -GEL--IRT-----------------NDNNY----------TWAFQLATSS-DY--LLGFYGSSQLYMWN
   WD 8  339-379    SDALGDGTS-----------------EDTLY----------TVGSSGVVSF-DDQVAATTSSD-SVTFWD
   WD 9  383-420    -RAI--IGK-----------------VKLNG----------K-ISSMRKNT-SHSVLCGVDNSMYSVTVP

   WD40 Template    TGEC--LRT-----------------LSGHT----------SGVTSVSFSP-DGKRLVSGSEDGTIKVWD