Input parameters:

  Query = D2030.9b (Len=530)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D2030.9b, Len=530):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPYKRHSSSNLKRNHSNDSDTDFSSDDEGCPKMTPHEEQQMFEREQHIAFSGRCHIGDPESCTQLRNEINSRCGPRPSTS 80  
WD40-rpts      (___________________WD 1__________________)                             (_______

Query       81 NNMEFILNRDLQKRGTSISNPRTVARVLNSHLPNQKRRVDRVATKSFCTQYIQNGTKIVVASQDEKIRFYQRNPDKSKYR 160 
WD40-rpts      _________WD 2_______________)   (_________________WD 3________________)         

Query      161 SKYMKSDELRVDQCGWSILDTAISLNGDLIAYGTWKDAVFVGKLDFTERQNITWFPIDLNGEPGRDHCAVFCVKFSDSSE 240 
WD40-rpts       (__________________WD 4__________________)(_______________________WD 5_________

Query      241 QIVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVNSVCFADLGSNLIYSAGDDGLVKVWDKRAWSDGDVEPVGVFAGHRDG 320 
WD40-rpts      ______________)     (_________________WD 6________________)        (____________

Query      321 VTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVEATRACVQSQHWDYRWQPAPPGLCQPVAGDTSVMTLRGHSVLHT 400 
WD40-rpts      _____WD 7________________)   (_________________WD 8________________)____________

Query      401 LVRANFSPESTGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVI 480 
WD40-rpts      _____WD 9___________________)   (_________________WD10________________)(________

Query      481 APYDHPNISQFGDEDSCDELFQPVKKQCRRQRKTMSSRGHPCSSSSISQN 530 
WD40-rpts      _____WD11____________)                            

11 WD40-repeats found in QUERY=D2030.9b (Len=530):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-43       6.94  401.27  0.00024       17.5%      6.18
  WD 2:  Seg  3    73-109      4.22  288.98  0.00791        7.5%     23.22
  WD 3:  Seg  5   113-151      7.66  431.25  9.6e-05       15.0%     48.98
  WD 4:  Seg 10   162-203      7.33  417.27  0.00015       10.0%     51.54
  WD 5:  Seg 14   204-255      6.67  389.99  0.00035       30.0%     49.26
  WD 6:  Seg 17   261-299      7.85  438.99  7.5e-05       32.5%     48.90
  WD 7:  Seg 20   308-346      9.61  511.70  7.9e-06       45.0%     54.20
  WD 8:  Seg 24   350-388      5.74  351.63  0.00114        7.5%     10.55
  WD 9:  Seg 25   386-429      5.57  344.64  0.00141       27.5%     54.59
  WD10:  Seg 29   433-471      9.61  511.83  7.9e-06       35.0%     55.60
  WD11:  Seg 33   472-502      3.50  259.25  0.01980       15.0%     34.57

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-43     -------M--------PYKRHSS----SNLKRNHSNDS---DTDFSSDDEGCPKMTPHEEQQMFE
   WD 2   73-109    -C--GPRP--------STSNNME----FILNRDLQKRG---TSISNPRT--VARVLN--------
   WD 3  113-151    -P--NQKR--------RVDRVAT----KSFCTQYIQNG---TKIVVASQDEKIRFYQ--------
   WD 4  162-203    KYMKSDEL--------RVDQCGW----SILDTAISLNG---DLIAYGTWKDAVFVGK--------
   WD 5  204-255    LD--FTERQNITWFPIDLNGEPGRDHCAVFCVKFSDSS---EQIVCGTSQYSIHVFD--------
   WD 6  261-299    ----RIRT--------IVNAHED----DVNSVCFADLG--SNLIYSAGDDGLVKVWD--------
   WD 7  308-346    -V--EPVG--------VFAGHRD----GVTHVDSRQDE---RYLLSNSKDQTIKVWD--------
   WD 8  350-388    -F--SNMS--------GVEATRA----CVQSQHWDYRW---QPAPPGLCQPVAGDTS--------
   WD 9  386-429    -D--TSVM--------TLRGHSV--LHTLVRANFSPESTGRRYIYTGCARGEVVVYD--------
   WD10  433-471    -G--TVSR--------RLKGHTA----VVRECDWHPTE---NEIVSSAWDGVTTVWT--------
   WD11  472-502    -----------------WDERQE----GVIAPYDHPNI---SQF--GDEDSCDELFQ--------

   WD40 Template    TG--ECLR--------TLSGHTS----GVTSVSFSPDG---KRLVSGSEDGTIKVWD--------