Input parameters:

  Query = D2030.9c (Len=563)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D2030.9c, Len=563):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNWITSTFLRFDLFQRHQPNRFLEYTRVQHSNQSPAYSVRTAAEIVAHQRMKPNHSNDSDTDFSSDDEGCPKMTPHEEQ 80  
WD40-rpts                                                                                      

Query       81 QMFEREQHIAFSGRCHIGDPESCTQLRNEINSRCGPRPSTSNNMEFILNRDLQKRGTSISNPRTVARVLNSHLPNQKRRV 160 
WD40-rpts                      (________________________WD 1________________________)   (______

Query      161 DRVATKSFCTQYIQNGTKIVVASQDEKIRFYQRNPDKSKYRSKYMKSDELRVDQCGWSILDTAISLNGDLIAYGTWKDAV 240 
WD40-rpts      ___________WD 2________________)          (__________________WD 3_______________

Query      241 FVGKLDFTERQNITWFPIDLNGEPGRDHCAVFCVKFSDSSEQIVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVNSVCFA 320 
WD40-rpts      ___)     (_____________________WD 4____________________)     (_________________W

Query      321 DLGSNLIYSAGDDGLVKVWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVSQH 400 
WD40-rpts      D 5________________)        (_________________WD 6________________)             

Query      401 WDYRWQPAPPGLCQPVAGDTSVMTLRGHSVLHTLVRANFSPESTGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVR 480 
WD40-rpts                        (___________________WD 7___________________)   (______________

Query      481 ECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHPNISQFGDEDSCDELFQPVKKQCRRQRKTMSSRGHPCSSSSI 560 
WD40-rpts      ___WD 8________________)(_____________WD 9____________)                         

Query      561 SQN 563 
WD40-rpts         

9 WD40-repeats found in QUERY=D2030.9c (Len=563):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    97-150      2.87  233.13  0.04401       10.0%     19.08
  WD 2:  Seg  6   154-192      7.55  426.49  0.00011       15.0%     48.71
  WD 3:  Seg 11   203-244      7.33  417.63  0.00015       10.0%     52.26
  WD 4:  Seg 15   250-296      7.11  408.33  0.00020       27.5%     46.79
  WD 5:  Seg 18   302-340      7.81  437.07  8.0e-05       32.5%     48.63
  WD 6:  Seg 21   349-387      9.60  511.28  8.0e-06       45.0%     51.12
  WD 7:  Seg 27   419-462      5.64  347.66  0.00128       27.5%     52.49
  WD 8:  Seg 31   466-504      9.66  513.64  7.4e-06       35.0%     55.17
  WD 9:  Seg 35   505-535      3.65  265.33  0.01642       15.0%     30.71

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   97-150    IG--DPESCTQLRNEINSRCGPR---PSTSNNM--E----FILNRDLQKRG---TSISNPR--TVARVLN
   WD 2  154-192    -P--N----------------QK---RRVDRVA--T----KSFCTQYIQNG---TKIVVASQDEKIRFYQ
   WD 3  203-244    KYMKS----------------DE---LRVDQCG--W----SILDTAISLNG---DLIAYGTWKDAVFVGK
   WD 4  250-296    RQ--N----------------ITWFPIDLNGEP--GRDHCAVFCVKFSDSS---EQIVCGTSQYSIHVFD
   WD 5  302-340    ----R----------------IR---TIVNAHE--D----DVNSVCFADLG--SNLIYSAGDDGLVKVWD
   WD 6  349-387    -V--E----------------PV---GVFAGHR--D----GVTHVDSRQDE---RYLLSNSKDQTIKVWD
   WD 7  419-462    -D--T----------------SV---MTLRGHSVLH----TLVRANFSPESTGRRYIYTGCARGEVVVYD
   WD 8  466-504    -G--T----------------VS---RRLKGHT--A----VVRECDWHPTE---NEIVSSAWDGVTTVWT
   WD 9  505-535    ----------------------------WDERQ--E----GVIAPYDHPNI---S--QFGDEDSCDELFQ

   WD40 Template    TG--E----------------CL---RTLSGHT--S----GVTSVSFSPDG---KRLVSGSEDGTIKVWD