Input parameters:

  Query = E04D5.1a (Len=570)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (E04D5.1a, Len=570):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDNLVYAVRSSEGFYLKRGLGKDAVTVFEQNKTSRDVACNVFAYSNNGQLFAYCDNQVTRVFEIATNKEILCVELKRTR 80  
WD40-rpts                                    (______________WD 1______________)(_______________

Query       81 KILFSPKDNFLLTFEPWAVYGPKTAENQKPEPNVRVYSLADGKHVSTFSAPKEASWEPQFSDDESLAARMVGSEVFFYTN 160 
WD40-rpts      _________WD 2________________________)   (_________________WD 3________________)

Query      161 MSFDRYDHKLVEKGATNFALSPGPAPNHVAVYVPAVGSTPARVRVHRVSESFPVVGNRTFFKSDKAVMTWNQRGQSLLIL 240 
WD40-rpts                                                                    (_________________

Query      241 ASVEVDKTNQSYYGEQSLYLINIQSGESVVVPLEKKGPIYAAKWNPNGREFAVCYGYMPAKVTFYNPRGVPIFDTIEGPR 320 
WD40-rpts      WD 4_________________)   (__________________WD 5_________________)(_____________

Query      321 NDVFYNAFGNIVLICGFGNIAKGKMEFWDVETKKEIISIEVPNTTLFDWAPDGQHFVTCTTAPRLRIDNSYRFWHYTGRM 400 
WD40-rpts      ______WD 6__________________)(_________________WD 7_________________)           

Query      401 LAETHFESPKELWEVRWRPMTGYNKFAIKELTKTDKMAAGLPIRKKDASHPLNNVPAGAVRQAGAYIPPHLRKPLGGGGS 480 
WD40-rpts                                                                                      

Query      481 AGPPSAAAPTPGNQNQRPAQPRANGNGNAPQPFRPQQSEQERKAFQLKKKVEEIKVLKQRVANGDQLQPNQMEKIQRENE 560 
WD40-rpts                                                                                      

Query      561 YLSELSKLTI 570 
WD40-rpts                

7 WD40-repeats found in QUERY=E04D5.1a (Len=570):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    31-64       3.56  261.87  0.01827        7.5%     42.99
  WD 2:  Seg  7    65-118      4.26  290.73  0.00750       15.0%     45.62
  WD 3:  Seg 11   122-160      4.45  298.62  0.00587       15.0%     37.42
  WD 4:  Seg 19   223-262      4.71  309.04  0.00425        7.5%     43.75
  WD 5:  Seg 23   266-306      4.87  315.66  0.00346       12.5%     48.62
  WD 6:  Seg 27   307-349      3.30  251.15  0.02539       12.5%     43.34
  WD 7:  Seg 31   350-389      4.57  303.33  0.00508       15.0%     43.62

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-64     -----QNKTSRDVACNVFAYSNNGQLFA--Y--------------CD-----NQVTRVFE
   WD 2   65-118    IATNKEILCVELKRTRKILFSPKDNFLL--TFEPWAVYGPKTAENQK----PEPNVRVYS
   WD 3  122-160    -GKHVSTFSAPKEASWEPQFSDDESLAA--R--------------MV----GSEVFFYTN
   WD 4  223-262    SDKAVMTWNQRGQSLLILASVEVDKTNQ--S--------------YY----GEQSLYLIN
   WD 5  266-306    -GESVVVPLEKKGPIYAAKWNPNGREFAVCY--------------GY----MPAKVTFYN
   WD 6  307-349    -PRGVPIFDTIEGPRNDVFYNAFGNIVL--I--------------CGFGNIAKGKMEFWD
   WD 7  350-389    VETKKEIISIEVPNTTLFDWAPDGQHFV--T--------------CT----TAPRLRIDN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV--S--------------GS----EDGTIKVWD