Input parameters:

  Query = F02E9.10a (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F02E9.10a, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDMMNEEGIPQATIVAKYEKAHNRSVVGIWSFRFCGQIGMLSVSHDCSKLWILQEDSSNNISLDERMVLAKWRTAIQAA 80  
WD40-rpts      (________________________WD 1_______________________)          (________________

Query       81 DISVDGKYMVAVGMNSIVYEVELVNTVKSMAFDFGYLDAVFCAVSPLKTGYVTASYSGHLNEIQHSSNEIIRQEPFPTVK 160 
WD40-rpts      _WD 2________________)   (_________________WD 3________________)(_______________

Query      161 QISCLKYSRDAKYLAIGQLDGAIEMLYSENFKNYHKYEVHSMRIRKIEFLPNEERFLSACDDRLIKLHSLSEFTETDPSR 240 
WD40-rpts      ____WD 4__________________)   (_________________WD 5________________)           

Query      241 STKAIRVYSAHDAPVTGLTIDEKSGGTRFASSSASSQIFIWHIEMTTPIMSITNEHTSTISALSFSPTSRHLLSGGDDAM 320 
WD40-rpts       (__________________WD 6_________________)    (_________________WD 7____________

Query      321 ILIYRIPGVGENTPVHVAYYPPVEQPSDITEPESSSQLAEVPSASPYDEHDQQENEPPSDYTQEGGHEYYRSHEEYDAAQ 400 
WD40-rpts      ____)(_______________WD 8______________)   (_________________WD 9_______________

Query      401 YQEYNPYAEPRTPPREDDEEIGNYVYNSTTEHQQNNESASPPAHEQYDPSA 451 
WD40-rpts      _)                                                 

9 WD40-repeats found in QUERY=F02E9.10a (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-53       5.77  353.12  0.00108       17.5%     49.16
  WD 2:  Seg  5    64-102      7.76  435.18  8.5e-05       15.0%     51.85
  WD 3:  Seg  9   106-144      6.03  363.64  0.00078       12.5%     55.07
  WD 4:  Seg 13   145-187      7.48  423.53  0.00012       20.0%     51.66
  WD 5:  Seg 17   191-229      9.06  489.07  1.6e-05       20.0%     57.04
  WD 6:  Seg 21   242-282      7.65  430.54  9.8e-05       27.5%     53.90
  WD 7:  Seg 25   287-325      9.13  491.90  1.5e-05       30.0%     50.82
  WD 8:  Seg 29   326-360      6.25  372.72  0.00059        7.5%     39.49
  WD 9:  Seg 31   364-402      5.01  321.75  0.00287        7.5%      9.37

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-53     MDD---MMNEEGIPQATIVAKYEKAHNRSVVGIWSFRF--CGQIGMLSVSHDCSKLWI
   WD 2   64-102    -LD---ER------------MVLAKWRTAIQAA-DISV--DGKYMVAVGMNSIVYEVE
   WD 3  106-144    -TV---KS------------MAFDFGYLDAVFC-AVSP--LKTGYVTASYSGHLNEIQ
   WD 4  145-187    HSSNEIIR------------QEPFPTVKQISCL-KYSR--DAKYLAIGQLDGAIEMLY
   WD 5  191-229    -FK---NY------------HKYEVHSMRIRKI-EFLP--NEERFLSACDDRLIKLHS
   WD 6  242-282    -TK---AI------------RVYSAHDAPVTGL-TIDEKSGGTRFASSSASSQIFIWH
   WD 7  287-325    -TP---IM------------SITNEHTSTISAL-SFSP--TSRHLLSGGDDAMILIYR
   WD 8  326-360    --------------------IPGVGENTPVHVA-YYPP--VEQPSDITEPESSSQLAE
   WD 9  364-402    -AS---PY------------DEHDQQENEPPSD-YTQE--GGHEYYRSHEEYDAAQYQ

   WD40 Template    TGE---CL------------RTLSGHTSGVTSV-SFSP--DGKRLVSGSEDGTIKVWD