Accession: F10F2.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = F10F2.1 (Len=2507)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F10F2.1, Len=2507):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEISETSHNESGPPVQENGIVEIPVEEGEEVNDEESNMETVDLGLDDSAADASSPSVFKNIDDEAPGDPSDAAKKEEDSE 80  
WD40-rpts                                                                                      

Query       81 EIVVPSVLAPTPSQEVSPPNAIESLPPLPEGKELELEDDVTSSLPRLLSKTTLIHSNEEGADETIQRLVTVLHSNSPNTD 160 
WD40-rpts                                                                                      

Query      161 RTQVVDNLFNLLVGGHFDQESKFVIEDAANVDHMLTLLSHCDYDLQNEIWSLFLAVMKKSNRNLEACTRVGLISKVLDIL 240 
WD40-rpts                                                                                      

Query      241 PEAPPLLADLLVQIIAALVAYSINVKQTKHLLRALKSTKEQWPPNSLKLLHVLKEMPQHDSADVFFSFPGKDQSGIILPP 320 
WD40-rpts                                                                                      

Query      321 IKTMPYQQGWTFATWLRMEPLNSVTFEKEQPVLYSFRTSKGVGYSCHFTGNCLVVNVEKTKGKEQSRCVRAELGARKWHH 400 
WD40-rpts                                                                                      

Query      401 IAIAHCYSRWGRSDIKCFIDGQLAETIELSWVVTSATNWDRCSIGVSADGTANSAFCGQMGAMYLFAEALTLQQANSLFC 480 
WD40-rpts                                                                                      

Query      481 LGPVYQSTFKHDSETSLPEGYKKHLFDGHLHSSLVFAYCPKNCHGQLCLYTPPKTAASTYFVQIPHAVMKEGVEVITTHS 560 
WD40-rpts                                                                                      

Query      561 IHKSLQSVGGIQILLPLFAQIDLPSSNDNSIDGEVCQTLLSLIALLLSSSQSSQQQLFHSKGFLIISSCLQKASPSHLSM 640 
WD40-rpts                                                                                      

Query      641 KVLEQLIHIAKFLLRCPAGGPLLKHLFDYILFNPKLWIRARPEVQVHLYQYLATDFLANNNFSQMLRRVPTVIEMCHTLK 720 
WD40-rpts                                                                                      

Query      721 HFYWLALPQTVSDYTIEERPENFATADIVAIRSSILTFINRIIIASAGPEEEERVRDQEVHTLLNLLATVREDDNLYDVL 800 
WD40-rpts                                                                                      

Query      801 ALVTRLLAEHPAIMIPAIDKNKALGIIFNLLAAPNELIRIPALKILGFFLSRSTLKRKTESMGNQNLFSLIGERLLSHKK 880 
WD40-rpts                                                                                      

Query      881 VLSLPTYNVLLEILVEQMTPTFTYACHQPAQPEWKFENPHLLKVIAHVISQCEESENIVQIKKCFLIDIINLCRESKENR 960 
WD40-rpts                                                                                      

Query      961 RTILQMSVWQDWLIGLAYVFHTTESQNEVSELVWEAFSILLHHALRNEYGGWRVWVDTLAIAHSKVSFEKFKRKLAEAKI 1040
WD40-rpts                                                                                      

Query     1041 KAERSESGGEEAKMEPTPIYRAPEFAWSDVHVRLLADLLSGIERVVDEWKVAECGISDQCNASENQVFVGNVVHVVSQLS 1120
WD40-rpts                                                                                      

Query     1121 DSLIMACGGLLPLLASATAPNNDMEIVDPCQQQLPISVSAGFLMRFARLVDTFVLASGVSFSELEQEKNMPAGGVLRQSL 1200
WD40-rpts                                                                                      

Query     1201 RISATVTVRHILASRIQQPDTPRYETNSTKKNQCIMEFVREALEKRSPDGLENVERLVQDSDITRIKGVVYRDMVEENRQ 1280
WD40-rpts                                                                                      

Query     1281 AQFLALSVIYLVSVLMVSRYRDILEPPSSPSPFFDSTTQKQENSENVNSETSPENGSNGKLANGGDNLSIKNGIESNGND 1360
WD40-rpts                                                                                      

Query     1361 GEEEENGEEGQGDDGGRIAAIKVANADMKRGDGNEYDEEELSKMHQSNGRRPSTMMPVQQTAERRAYLTTKLQTALETCA 1440
WD40-rpts                                                                                      

Query     1441 PLLREMMSDFRGYLQKTLLGTHGQEIMNDTKVLETLRNRNASVIELVMLLCSQEWQTSLQKHAGLAFIELVNEGRLMAHA 1520
WD40-rpts                                                                                      

Query     1521 TRDHVLRVANEADFILNRLRAEDVSKHAQFEAESREQLAARHEEYGRCDLLIASGRLRDSINATRLLEKMSAILSDQDDS 1600
WD40-rpts                                                                                      

Query     1601 KSGTQFWKLDVWEDDSRRRKRFVPNAYGSRHEEANLPEGEKNEEPEISEQEKIRKVLKGLFSKRQNSSGSHELVDESDID 1680
WD40-rpts                                                                                      

Query     1681 KWAQEVDPTPSSQSACFSTTAKLIAPGVVVPGTLSVTANDLFFDANESDPNYKKQCAQVLRYCEALHARWNLQEIRAIFL 1760
WD40-rpts                                                                                      

Query     1761 RRYLLQNTALELFLASRTAIMFAFDSEDAVKKVVYQLPRVGVGVKYGLPQSRKTSLMTPRQLFKHSDMCAKWQKREISNF 1840
WD40-rpts                                                                                      

Query     1841 DYLMFLNTVAGRTFNDLSQYPVFPWILTNYTSDTLDLSVASNFRDLSKPIGALSEARRKFFNDRYTSWDDDQVPAFHYGT 1920
WD40-rpts                                                                                      

Query     1921 HYSTPAFTLNWLLRVEPFASMFINLHDGKFDHPDRITHSIKDSWDRCQRDSHDVKELIPELFYLPEMFRNSSKFNLGRRA 2000
WD40-rpts                                                                                      

Query     2001 DGTPVDDVVLPPWAESPEHFVLMHRQALESDLVSCQLNQWIDLIFGYKQRGAEAVRATNVFYHLTYEGTVTPKMAETPGQ 2080
WD40-rpts                                                                                      

Query     2081 VAAIEQQILSFGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQPTVVGVAQNLV 2160
WD40-rpts                                                                                      

Query     2161 FSLNKWDNSYSYGASQRSALSMDPSNAEGQVSLPLTADAQLASAASTTPVARRHLGDAFDQRLTVQCSNFVTTTDSKFIF 2240
WD40-rpts                                                                                      

Query     2241 ACGYPDYSFRIVDTDSGRVRQAVYGHGDVVTCIARSETSLFSDCYVVTGSMDCTVVLWHWNGTTGFIAGEYNQPGEVPSP 2320
WD40-rpts                      (___________________WD 1__________________)                     

Query     2321 RSILTGHEASISALCVSAEHGLVVSGCEDGVILIHTTSSDLLRRIRGHGIVTQLSMSRECILLSLFDSKRMVTYSATAKK 2400
WD40-rpts       (_______________WD 2______________)                                       (____

Query     2401 LDEVLVDDKIECVTVTRDGEFAVTGAVNGRINIWRMFPLTKLYTYQPLNSAVRSVAVVASHRFILGGLDSGAIVVFNADF 2480
WD40-rpts      _____________WD 3_________________)   (_________________WD 4________________)   

Query     2481 NRWHYEYKHRYIQNTSAAKPVQQSPQK 2507
WD40-rpts

4 WD40-repeats found in QUERY=F10F2.1 (Len=2507):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 40  2257-2299     5.26  332.00  0.00209       30.0%     55.77
  WD 2:  Seg 44  2322-2356     5.11  325.67  0.00254       27.5%     49.16
  WD 3:  Seg 51  2396-2435     4.54  302.11  0.00527       20.0%     50.35
  WD 4:  Seg 55  2439-2477     4.50  300.66  0.00551       25.0%     53.37

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 2257-2299   -GRVRQAVYGHGDVVTCIARSETSLFSDCYVVTGSMDCTVVLWH
   WD 2 2322-2356   -----SILTGHEASISALCVSAEHG----LVVSGCEDGVILIHT
   WD 3 2396-2435   ATAKKLDEVLVDDKIECVTVTRDGE----FAVTGAVNGRINIWR
   WD 4 2439-2477   -LTKLYTYQPLNSAVRSVAVVASHR----FILGGLDSGAIVVFN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK----RLVSGSEDGTIKVWD