Input parameters:

  Query = F10G8.3 (Len=373)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F10G8.3, Len=373):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFGSSGFGNKSMFGGSNISTSTTTPAANTTQNDDFLVDGAPEDTIQVIKFSPTPQDKPMLACGSWDGTIRVWMFNDANTF 80  
WD40-rpts                                     (__________________WD 1__________________)       

Query       81 EGKAQQNIPAPILDIAWIEDSSKIFIACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWD 160 
WD40-rpts        (_______________WD 2______________)  (__________________WD 3_________________)

Query      161 MKNLPNQTQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQIRCISIFKDKSNQNPAGFAL 240 
WD40-rpts         (_________________WD 4________________)           (_________________WD 5_____

Query      241 GSIEGRVAVQYVDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHP 320 
WD40-rpts      ____________)           (__________________WD 6__________________)   (__________

Query      321 MPLTCCDVHSSGAFLVYALGYDWSRGHEGNTQPGSKIVIHKCIEDMKPRPTKK 373 
WD40-rpts      _______WD 7________________)                         

7 WD40-repeats found in QUERY=F10G8.3 (Len=373):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    32-73       7.42  421.30  0.00013       32.5%     56.48
  WD 2:  Seg  6    83-117      7.35  418.37  0.00014       10.0%     49.90
  WD 3:  Seg  9   120-160      7.11  408.19  0.00020       22.5%     52.63
  WD 4:  Seg 13   164-202      6.70  391.35  0.00033       10.0%     47.62
  WD 5:  Seg 18   214-253      7.94  442.51  6.8e-05       12.5%     22.07
  WD 6:  Seg 22   265-306      7.26  414.67  0.00016       25.0%     42.39
  WD 7:  Seg 25   310-348      5.11  325.63  0.00254       17.5%     43.30

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-73     -NDDFLVDGA--PEDTIQVIKF--SPTPQDKPMLACGSWDGTIRVWM
   WD 2   83-117    -----KAQQN--IPAPILDIAW--IE---DSSKIFIACADKEARLWD
   WD 3  120-160    -SNQVAVVGT--HDGPVKTCHWINGN---NYQCLMTGSFDKTLRFWD
   WD 4  164-202    -LPNQTQMAQ--IQLPERVYAA--DV---LYPMAVVALANKHIKVYN
   WD 5  214-253    ESQLKFQIRC--ISIFKDKSNQ--NP---AGFALGSIEGRVAVQYVD
   WD 6  265-306    CHRSAELVNGFQEIYAVNDICF--HP---QHGTLVTIGSDGRYSMWD
   WD 7  310-348    -RTKLKTSEP--HPMPLTCCDV--HS---SGAFLVYALGYDWSRGHE

   WD40 Template    TGECLRTLSG--HTSGVTSVSF--SP---DGKRLVSGSEDGTIKVWD