Input parameters:

  Query = F13D12.7a (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F13D12.7a, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYAMHWASDSRNLVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFRTFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSMRQERAGVLAGHDNRVSCLGV 320 
WD40-rpts      _____________)(___________________WD 6___________________)   (_________________W

Query      321 TEDGMAVCTGSWDSFLKIWN 340 
WD40-rpts      D 7________________)

7 WD40-repeats found in QUERY=F13D12.7a (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    45-83      10.03  528.99  4.6e-06       37.5%     50.66
  WD 2:  Seg  8    87-125      8.71  474.65  2.5e-05       15.0%     56.55
  WD 3:  Seg 12   133-170      7.52  425.37  0.00012       32.5%     49.29
  WD 4:  Seg 16   174-212     10.32  540.81  3.2e-06       40.0%     56.06
  WD 5:  Seg 20   216-254     10.38  543.33  3.0e-06       37.5%     53.56
  WD 6:  Seg 24   255-298      8.36  460.05  3.9e-05       32.5%     56.94
  WD 7:  Seg 28   302-340      9.74  516.82  6.7e-06       30.0%     49.27

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-83     -MR----TRRTLRGHLAKIYAMHWASDSRNLVSASQDGKLIVWD
   WD 2   87-125    -TN----KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS
   WD 3  133-170    -VR----VSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMTCALWD
   WD 4  174-212    -GQ----QCTAFTGHTGDVMSLSLSPDFRTFISGACDASAKLWD
   WD 5  216-254    -GM----CKQTFPGHESDINAVAFFPSGNAFATGSDDATCRLFD
   WD 6  255-298    IRADQELAMYSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWD
   WD 7  302-340    -QE----RAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD