Input parameters:

  Query = F13H8.2 (Len=929)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F13H8.2, Len=929):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLTKDYLKYEHAGSCGCVGSANGQLVAIDGQTVAVSANEYLNFYNMRTAEKVNEIIESTKPISCVRQCENKPLLAIGYA 80  
WD40-rpts      (____________________WD 1____________________)   (_________________WD 2_________

Query       81 DGSVKLFNQENEDSEPIMFSGHKKAVNCIEFSSDGLLFATGGKDGVIVLWDILAERGMFRLHGHKESVTQMKFVRGDRFI 160 
WD40-rpts      _______)    (_________________WD 3________________)   (_________________WD 4____

Query      161 ISTSKDSLIKFWSIASQSCFYTVMDSRNEIYSMSLHRDETVLVAATAELELLVFELNWKNGAIFEQEVKSEEPSAKKATN 240 
WD40-rpts      ____________)   (_________________WD 5________________)     (_________________WD

Query      241 DDEKEDDVLANMANRYITTKLRGRVIRQSKGRALQLVATHDDRFLVCVGADKVADVYRVFSETESAKRLTKKLKSAKRKA 320 
WD40-rpts       6________________)(_________________WD 7________________)                      

Query      321 TSDTTTVNEDDVAKDVTILVTRIGEMVLPHKIKWIDVVRSVKTNENTLIYKWYALLTDNTVHWVKMSIETTSNSVECDSV 400 
WD40-rpts                                                                            (_________

Query      401 GNLDKLGHREDVRALCVSSSSSLLASGGGNEVIVWSTHSLRSSLTLTDNDIKDIVAVNFVPGDNYILTGGKNGEIGVFEL 480 
WD40-rpts      ___________WD 8____________________)   (_________________WD 9_________________) 

Query      481 SSAELVETRKAHTGAIWTIQNSPDNEGFITASADKTVRFWSFVLVTEGSRKRISIKEQKVLELPDEALAASFSADGKFLV 560 
WD40-rpts        (_________________WD10________________)            (_________________WD11_____

Query      561 VALLNNTCSVYFVNTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVWGLDFGDCHKSFHAHDDAVTSVLFCPGE 640 
WD40-rpts      ___________)   (_________________WD12________________)   (_________________WD13_

Query      641 EQLFWSAGKDGKIKQWDAVKFIMVQVLDRHTLDIRCLAQFTNGSVMFSASHDKSIRCWEKTDEILIVEEREEVEREEEYE 720 
WD40-rpts      ________________)   (_________________WD14________________)(___________________W

Query      721 KKLIEEEDVVAGENADNEAGVASSKTSSSVVSAENIIQAVDIARNEKVQRQEDPGHEPHPLIGAYNSKSLDHFIVDVVAK 800 
WD40-rpts      D15___________________)                                                         

Query      801 CRASDLDRTLLLVPLSYVADILLAISSCTQQQYKAELCTHVAVYLTRIHLSHITASSDYVPIFEQMKSKMSEGVEKLRNV 880 
WD40-rpts                                                                                      

Query      881 TGINLAALRLLATELEDREQVKKFAQIELGVEDPKKKRKGRKAVLKTLA 929 
WD40-rpts                                                       

15 WD40-repeats found in QUERY=F13H8.2 (Len=929):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-46       3.99  279.42  0.01063       12.5%     43.04
  WD 2:  Seg  5    50-88       7.57  427.44  0.00011       20.0%     58.79
  WD 3:  Seg  9    93-131      8.79  477.90  2.3e-05       35.0%     58.58
  WD 4:  Seg 13   135-173      8.69  473.60  2.6e-05       30.0%     57.99
  WD 5:  Seg 17   177-215      7.68  431.73  9.4e-05       20.0%     56.03
  WD 6:  Seg 21   221-259      4.80  312.75  0.00379        7.5%     42.53
  WD 7:  Seg 24   260-298      5.36  335.97  0.00185       15.0%     54.56
  WD 8:  Seg 34   391-436      5.81  354.76  0.00103       25.0%     51.35
  WD 9:  Seg 38   440-479      6.48  382.36  0.00044       22.5%     58.06
  WD10:  Seg 42   483-521      9.20  494.76  1.3e-05       27.5%     56.16
  WD11:  Seg 46   534-572      6.38  378.38  0.00049       25.0%     54.05
  WD12:  Seg 50   576-614      9.26  497.02  1.2e-05       37.5%     57.07
  WD13:  Seg 54   618-657      8.13  450.30  5.3e-05       42.5%     55.96
  WD14:  Seg 58   661-699      8.52  466.50  3.2e-05       22.5%     55.62
  WD15:  Seg 62   700-743      3.58  262.51  0.01791        5.0%     43.36

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-46     MGLTKD-------YLKYEHAGSCGC-VGSANGQLVAIDGQTV-AVSA-NEYLNFYN
   WD 2   50-88     -AEKVN-------EII-------ES-TKPISCVRQCENKPLL-AIGYADGSVKLFN
   WD 3   93-131    -DSEPI-------MFS-------GH-KKAVNCIEFSSDGLLF-ATGGKDGVIVLWD
   WD 4  135-173    -ERGMF-------RLH-------GH-KESVTQMKFVRGDRFI-ISTSKDSLIKFWS
   WD 5  177-215    -QSCFY-------TVM-------DS-RNEIYSMSLHRDETVL-VAATAELELLVFE
   WD 6  221-259    -GAIFE-------QEV-------KS-EEPSAKKATNDDEKED-DVLANMANRYITT
   WD 7  260-298    -KLRGR-------VIR-------QS-KGRALQLVATHDDRFL-VCVGADKVADVYR
   WD 8  391-436    TSNSVECDSVGNLDKL-------GH-REDVRALCVSSSSSLL-ASGGGN-EVIVWS
   WD 9  440-479    -LRSSL-------TLT-------DNDIKDIVAVNFVPGDNYI-LTGGKNGEIGVFE
   WD10  483-521    -AELVE-------TRK-------AH-TGAIWTIQNSPDNEGF-ITASADKTVRFWS
   WD11  534-572    -SIKEQ-------KVL-------EL-PDEALAASFSADGKFL-VVALLNNTCSVYF
   WD12  576-614    -LKFFV-------SLY-------GH-SLPVTCVDIAPSSKLC-VTGSVDKSVKVWG
   WD13  618-657    -GDCHK-------SFH-------AH-DDAVTSVLFCPGEEQLFWSAGKDGKIKQWD
   WD14  661-699    -FIMVQ-------VLD-------RH-TLDIRCLAQFTNGSVM-FSASHDKSIRCWE
   WD15  700-743    KTDEIL-------IVE---EREEVE-REEEYEKKLIEEEDVV-AGENADNEAGVAS

   WD40 Template    TGECLR-------TLS-------GH-TSGVTSVSFSPDGKRL-VSGSEDGTIKVWD