Input parameters:

  Query = F17C11.10 (Len=1101)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F17C11.10, Len=1101):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFTNVKNLENIGLQTICIDASGEDTENIYVCDAERNVLKINKNVLLQDEKPEIIEIPDATTSSIAWYGENICFGYRKVD 80  
WD40-rpts      (___________________WD 1__________________)              (________________WD 2__

Query       81 FIVGSEQQMVGRAKKGNFEAGDIIDPLEFQMDVTTVDANRENVIGGSSDYAVKCTNMKDLDAELKTRSLEAEVLCVKLDP 160 
WD40-rpts      _____________)   (_________________WD 3________________)   (_________________WD 

Query      161 KNEFVAVSTVDGNVTIIDIDSFSIKHTLTKVFPRFETIDVSRPRIQLSWSKDGQWLFVPSKGCVKSYRRNGWEESGVYRL 240 
WD40-rpts      4________________)          (_________________WD 5_________________)      (_____

Query      241 KDHASVDFSVTALSPCGKYLASSTMDNQIAVWNSDELDIVCCEKFVRNAPGITIITSIVFSPFSPKKLIVADSNRGICLF 320 
WD40-rpts      ____________WD 6________________)(_____________________WD 7_____________________

Query      321 NVFKDDSSNEKPVSNKTEDVAVDSDDDDSILLNRTSLKKDSLFNEEAIEEDEDTRMSSDLGAIKRQFNYGNQDLGGLEEF 400 
WD40-rpts      )  (_________________WD 8________________)                                      

Query      401 GFKLGEPEEMRPMSSDRNLNDPLPQVYSDPPAPRKVLIPERFVSNSSPMDLDATQRFLKYNRFGIIRSYVNEANKVSTID 480 
WD40-rpts                                                                                      

Query      481 IEFHNKSIHGDIHIDNFEINYELADISLKVVALASVESRKKEKELDKANDDIEDLETDEPAKTEKKGTSLLHVIPIQAFD 560 
WD40-rpts          (__________________WD 9__________________)                                  

Query      561 SQRWSMVLPRGDGCIDVLCSNTQVVVLTKKRNIRVFTIGGIQRQIFTHFAPILTAACFEDRLAIASVCGSEFYEQKKTPQ 640 
WD40-rpts                                                                                      

Query      641 WRFEVVEYTLNPKSWYRENRHHGSTGAVSRIDVPIETGEQLDWIAYSNQGKLAVMDSAYTVHVLSAPGLWIPIFQGSSAL 720 
WD40-rpts                                                                                      

Query      721 RAPSDAIFPIGLTVKEFRYIYCRGSRSPLVNGINAPTTVEFKVPFCQPESHRTEMEHEMFLKELSLADAILERNGDSHVE 800 
WD40-rpts                                                                                      

Query      801 EAKTLTKTIVKLFAWLTKTNSDGQAAEVAALVSGGTSASAKAIQSLCNYASKCKKVALAEKVAEIGRRLTEDDDDRSCND 880 
WD40-rpts                                                                                      

Query      881 TEIWPTKRIALAARKAQKAPSPTVESLNEDQTNDGDESSSRYNLNMDVSMMSQPVQPLERLAKNPFAKGSDTSKIDSAAS 960 
WD40-rpts                                                                                      

Query      961 SQASLSIFDQLESTSNDQRKRAREPETVTSTNQTVRKQAKLNFGGTQQSDEKKKKTSSKNSDLGQKGKENEAETLCPIEE 1040
WD40-rpts                                                                                      

Query     1041 PAKKSVSPYEMWLTESKSSLEFDFDGDNADFSKFCIQTFRALSKNEKEEWKAKALTAAAQD 1101
WD40-rpts                                                                   

9 WD40-repeats found in QUERY=F17C11.10 (Len=1101):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-43       4.50  300.41  0.00556       12.5%     43.52
  WD 2:  Seg  5    58-94       3.58  262.36  0.01799       15.0%     31.17
  WD 3:  Seg  8    98-136      6.07  365.43  0.00074       12.5%     48.78
  WD 4:  Seg 12   140-178      7.41  420.69  0.00013       15.0%     58.25
  WD 5:  Seg 17   189-228      4.40  296.23  0.00632       25.0%     42.03
  WD 6:  Seg 20   235-273      6.70  391.62  0.00033       27.5%     46.82
  WD 7:  Seg 24   274-321      4.30  292.25  0.00715       22.5%     44.32
  WD 8:  Seg 28   324-362      3.14  244.53  0.03109        7.5%      5.98
  WD 9:  Seg 31   485-526      3.35  253.24  0.02381       12.5%     24.39

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-43     -MSF-------TN-V--KNLENIGLQTICIDA-SGEDTENIYVCDAERNVLKINK
   WD 2   58-94     PDA-----------T--TSSIAWYGENICFGY-RKV----DFIVGSEQQMVGRAK
   WD 3   98-136    -FEA-------GD-I--IDPLEFQMDVTTVDA-NRE----NVIGGSSDYAVKCTN
   WD 4  140-178    -LDA-------EL-K--TRSLEAEVLCVKLDP-KNE----FVAVSTVDGNVTIID
   WD 5  189-228    TKVF-------PRFE--TIDVSRPRIQLSWSK-DGQ----WLFVPS-KGCVKSYR
   WD 6  235-273    -SGV-------YR-L--KDHASVDFSVTALSP-CGK----YLASSTMDNQIAVWN
   WD 7  274-321    SDELDIVCCEKFV-R--NAPGITIITSIVFSPFSPK----KLIVADSNRGICLFN
   WD 8  324-362    -KDD-------SS-N--EKPVSNKTEDVAVDS-DDD----DSILLNRTSLKKDSL
   WD 9  485-526    NKSI-------HG-DIHIDNFEINYELADISL-KVV----ALASVESRKKEKELD

   WD40 Template    TGEC-------LR-T--LSGHTSGVTSVSFSP-DGK----RLVSGSEDGTIKVWD