Input parameters:

  Query = F21H12.1 (Len=454)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F21H12.1, Len=454):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEILDRTYGAQFPEELECHLDLQNASANCCKFNRWGSIVAVGCTDGRVLIYDFMTRNIARTFSAHCLPVSCLSWSRDGR 80  
WD40-rpts                    (_________________WD 1________________)   (_________________WD 2__

Query       81 KLLTSSADNSIAMFDVLAGTLLHRIRFNSMVTFAMFHPRNDNKAIVLQVNKQPTVEQFSPRIQTVLANDTPGSSDESASC 160 
WD40-rpts      ______________)   (__________________WD 3_________________)(___________________W

Query      161 VSYDRKGKYIIAGTGKGKLLIYNAETLKCVAWCKQNTVQQIRQIIVPMKSRFIITNTQDRVIRTYELEDLLHQRGQMVEA 240 
WD40-rpts      D 4___________________)   (_________________WD 5_________________)(_____________

Query      241 KYKVLDMVNKAAWKNVCTDSDGLYVCGASTKAHSLYIWESNTGSLIKILHGNKGEALLDVQWHPTRPIILSIAQGTVSMW 320 
WD40-rpts      ___________WD 6_______________________)   (_________________WD 7________________

Query      321 TQAHVENWSAFAPEFQELEENEKYIEKENEFDMEDEDADEDMTSKSQDAEDDIIDVVNVRPEDYLASSDEEDCNIMKPAR 400 
WD40-rpts      )   (______________WD 8_____________)   (_________________WD 9________________) 

Query      401 NLESGPLWYIPVPLDIENADNDQRLPDDIRNLDNLLNPAWVASAKGYELSPKSK 454 
WD40-rpts                                                            

9 WD40-repeats found in QUERY=F21H12.1 (Len=454):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       7.97  443.79  6.5e-05       20.0%     48.40
  WD 2:  Seg  6    57-95       9.88  522.84  5.6e-06       35.0%     54.54
  WD 3:  Seg 10    99-139      5.82  354.92  0.00103       20.0%     47.19
  WD 4:  Seg 14   140-183      8.05  447.17  5.8e-05       17.5%     48.30
  WD 5:  Seg 18   187-226      7.16  410.45  0.00018       10.0%     56.28
  WD 6:  Seg 22   227-279      4.89  316.60  0.00337       15.0%     49.36
  WD 7:  Seg 26   283-321      6.71  391.75  0.00033       22.5%     53.85
  WD 8:  Seg 30   325-357      3.69  267.04  0.01558        5.0%     28.46
  WD 9:  Seg 34   361-399      7.79  436.30  8.2e-05       15.0%     36.54

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     -EE----LEC------------HLDLQN-A-SANCCKFNRWGSI---VAVGCTDG-RVLIYD
   WD 2   57-95     -RN----IAR------------TFSAHC-L-PVSCLSWSRDGRK---LLTSSADN-SIAMFD
   WD 3   99-139    -GT----LLH------------RIRFN--S-MVTFAMFHPRNDNKAIVLQVNKQP-TVEQFS
   WD 4  140-183    PRIQTVLAND------------TPGSSD-E-SASCVSYDRKGKY---IIAGTGKG-KLLIYN
   WD 5  187-226    -LK----CVA------------WCKQNTVQ-QIRQIIVPMKSRF---IITNTQDR-VIRTYE
   WD 6  227-279    LED----LLHQRGQMVEAKYKVLDMVNK-A-AWKNVCTDSDGLY---VCGASTKAHSLYIWE
   WD 7  283-321    -GS----LIK------------ILHGNK-GEALLDVQWHPTRPI---ILSIA-QG-TVSMWT
   WD 8  325-357    -VE----NWS------------AFAPEF-Q-EL------EENEK---YIEKENEF-DMEDED
   WD 9  361-399    -DM----TSK------------SQDAED-D-IIDVVNVRPEDYL---ASSDEEDC-NIMKPA

   WD40 Template    TGE----CLR------------TLSGHT-S-GVTSVSFSPDGKR---LVSGSEDG-TIKVWD