Input parameters:

  Query = F28C6.3 (Len=430)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F28C6.3, Len=430):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKPDIKDREYMYRLIIGQLFYDGHQQIAVNLANTLGCSAPAPPPSDKLFRLVTIAKQFVEDPDYKAEEKSSPMQFEPVSS 80  
WD40-rpts                          (______________WD 1_____________)   (_________________WD 2__

Query       81 GLDLEYDADVQPVSSEPSEYETIYLTVHKAPCRAAAFNSDGSLVATGSADCSIKIMDVERILAREKEHREMNENGPDAHH 160 
WD40-rpts      ______________)   (_________________WD 3________________)                      (

Query      161 PVIRTLYDHVDDVNTVIFHPRDSILISGSNDKTVKLFDFSKTAVKKAMKTLSEVYPVRALSCHPGGEFLLVATDHPTVRL 240 
WD40-rpts      _________________WD 4________________)(___________________WD 5__________________

Query      241 YNIETAQAYASANPDDQHTESVTDVHYSENARLYVTASKDGHVKIWDGVSNRCVETFKRAHDGSSICSAKFTKNGKYILT 320 
WD40-rpts      _)      (_________________WD 6________________)   (__________________WD 7_______

Query      321 SGMDSIVKLWELSTNRCLIVYTGAGATGAQDFATNASFNHNEDYVLFPDEKSGSMCSWDARNSDRKRLLALGHTSACRTF 400 
WD40-rpts      __________)           (________________WD 8_______________)   (_________________

Query      401 VHSPSMPAFMTGSDDHRARFWYRKPATNEH 430 
WD40-rpts      WD 9_________________)        

9 WD40-repeats found in QUERY=F28C6.3 (Len=430):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    21-53       6.56  385.63  0.00040        7.5%     31.28
  WD 2:  Seg  3    57-95       7.04  405.32  0.00021       10.0%     35.71
  WD 3:  Seg  7    99-137      9.10  490.44  1.5e-05       27.5%     53.31
  WD 4:  Seg 11   160-198      9.32  499.64  1.1e-05       40.0%     53.83
  WD 5:  Seg 15   199-242      7.43  421.68  0.00013       15.0%     52.65
  WD 6:  Seg 19   249-287      8.88  481.60  2.0e-05       32.5%     42.98
  WD 7:  Seg 23   291-331      8.05  447.15  5.9e-05       25.0%     54.65
  WD 8:  Seg 28   343-379      6.39  378.43  0.00049       20.0%     38.63
  WD 9:  Seg 31   383-422      8.13  450.32  5.3e-05       30.0%     48.11

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-53     -----------YD-GHQQI--AVNLANTLGCSA-PAPPPSDKLFRLVT
   WD 2   57-95     -QFV----EDPDY-KAEEK--SSPMQFEPVSSG-LDLEYDADVQPVSS
   WD 3   99-137    -EYE----TIYLT-VHKAP--CRAAAFNSDGSL-VATGSADCSIKIMD
   WD 4  160-198    -HPV----IRTLY-DHVDD--VNTVIFHPRDSI-LISGSNDKTVKLFD
   WD 5  199-242    FSKTAVKKAMKTL-SEVYP--VRALSCHPGGEF-LLVATDHPTVRLYN
   WD 6  249-287    -YAS----ANPDD-QHTES--VTDVHYSENARL-YVTASKDGHVKIWD
   WD 7  291-331    -NRC----VETFK-RAHDGSSICSAKFTKNGKY-ILTSGMDSIVKLWE
   WD 8  343-379    --------GAGAT-GAQDF--ATNASFNHNEDYVLFPDEKSGSMCSWD
   WD 9  383-422    -SDR----KRLLALGHTSA--CRTFVHSPSMPA-FMTGSDDHRARFWY

   WD40 Template    TGEC----LRTLS-GHTSG--VTSVSFSPDGKR-LVSGSEDGTIKVWD