Input parameters:

  Query = F28D1.1 (Len=580)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F28D1.1, Len=580):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPIKRSKPDGGVKKISITATDVTPAKGVEEKMSWKEYKKMKQHTGGGTRNKLKKKQRPPTENTEGRAKKPKVLTKEQLE 80  
WD40-rpts                                                                                      

Query       81 RHDTGADQIDPSSMRSKLQQEKMKVTKDKFQRRIEATAKAEKRLVENTGFVAPDEEDHSLTYSIRQKDIAESVDLAAATK 160 
WD40-rpts                                                                                   (__

Query      161 HFELKLPRFGPYHIDYTDNGRHLVIGGRKGHLAALDWQTKHLHFEQSVMEKVSDVKFLHTENFIAVAQKNYTYVYDNLGT 240 
WD40-rpts      _______________WD 1________________)  (_________________WD 2________________)(__

Query      241 ELHCLKTMYDTARLEFLPHHFLLVGSSRNSFLNYVDVSVGKQVASFATKSGTLDVMCQNPANAIIHTGHTNGTVSLWSPN 320 
WD40-rpts      _______________WD 3________________)   (_________________WD 4________________)  

Query      321 SKEPLVKILTHLSAVKGIAVDDQGNYMATTGLDRKCRIWDVRMFRQLHAYSLPFGVSNVAISQKMNVACAVGNHVQVFRG 400 
WD40-rpts       (_________________WD 5________________)   (_________________WD 6_______________

Query      401 MHNGTCKEPYLVHNCGGVVTDLRFVPWEDVLGIGHAGGFTSMLVPGAGDPNVDTLRSNPYETKSQRKEREIKQLLDKIQP 480 
WD40-rpts      _)(__________________WD 7__________________)                                    

Query      481 ELISLNPDDINKVNEGLLELEEEERKKILYIRPMAVQYTPRHKMRSKKSGWKMEARKNIVKDQIRMERNMEKHAVEKEVF 560 
WD40-rpts                                                                                      

Query      561 EAPEVDDEAPKKKHILDRLK 580 
WD40-rpts                          

7 WD40-repeats found in QUERY=F28D1.1 (Len=580):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   158-196      5.97  361.39  0.00084       20.0%     54.87
  WD 2:  Seg  7   199-237      4.88  316.42  0.00338       12.5%     49.40
  WD 3:  Seg 11   238-276      7.17  410.72  0.00018       22.5%     54.08
  WD 4:  Seg 15   280-318      7.02  404.65  0.00022       15.0%     53.39
  WD 5:  Seg 19   322-360      8.39  461.41  3.8e-05       22.5%     52.15
  WD 6:  Seg 23   364-402      2.79  229.89  0.04854       17.5%     31.44
  WD 7:  Seg 27   403-444      5.39  337.40  0.00177       22.5%     52.20

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  158-196    -ATK--HFELKLPRFGPYHIDYTDNGRHLVI-GGRKGHLAALD
   WD 2  199-237    -TKH--LHFEQSVMEKVSDVKFLHTENFIAV-AQKNYTYVYDN
   WD 3  238-276    LGTE--LHCLKTMYD-TARLEFLPHHFLLVG-SSRNSFLNYVD
   WD 4  280-318    -GKQ--VASFATKSGTLDVMCQNPANAIIHT-GHTNGTVSLWS
   WD 5  322-360    -KEP--LVKILTHLSAVKGIAVDDQGNYMAT-TGLDRKCRIWD
   WD 6  364-402    -FRQ--LHAYSLPF-GVSNVAISQKMNVACAVGNHVQVFRGMH
   WD 7  403-444    NGTCKEPYLVHNCGGVVTDLRFVPWEDVLGI-GHAGGFTSMLV

   WD40 Template    TGEC--LRTLSGHTSGVTSVSFSPDGKRLVS-GSEDGTIKVWD