Input parameters:

  Query = F30F8.8 (Len=648)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F30F8.8, Len=648):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSENSSSHSISSPQMFQNTHNNSAMEDNLLSRPMNNESLQMIIGYLRRNGLTETEELLTREAGPVLRVEGSNGLPPEEA 80  
WD40-rpts                                                                                      

Query       81 ISVEFDTFVQHANDCTDVVQAEFSQLLFPIFAHSYIALIEKHAATARIFFNRFKIFIPECFSEFVYQLSLIEDAMTLRAN 160 
WD40-rpts                                                                                      

Query      161 EHVHILRENKFLVRLSRPTLKHLESIQTRVIGVKNIIAKHICIENADEVSTNRTTIETQMGGILGVTSKSDKRHKMMFSV 240 
WD40-rpts                                                                                      

Query      241 LKDELMQNIEKRKTKGKDWKDMGKKMQTHCPQADRIPLPPISEHLREERRNWLRDVGKMAIISAESPVSICMYTTVNAPI 320 
WD40-rpts                                                                    (_________________

Query      321 GVASCDFTDDSSLIAMGLSDSSIVMNAMDPMNKMKKLRDMEFLDKIDIETADNVQSQMFDLQGSTTSVRYTGHGGPVFSV 400 
WD40-rpts      ___WD 1___________________)                                    (________________

Query      401 NFSPDRRLLISSAGDRTVRLWSMETQRNAVIYRTPAVVWQAQFCSRGYYFATASADKTAAMWSTDRMHPLRIFADPYGDV 480 
WD40-rpts      _WD 2________________)  (_________________WD 3________________)   (_____________

Query      481 GCIDYHPNCNYIAGGSDDRYVRVWDVCSGTRVRIFSGHKASIIAVKFSPCGRYIVSLDAIGNLMIWDLAYQRLVAAEITE 560 
WD40-rpts      ____WD 4________________)   (_________________WD 5________________)(____________

Query      561 QAGTKGSITFSRDGGVFAVSHGNSSIQLYSLDTLIGTVLAAGQNDSYIEPKVNLDGFNIGSYATKETAVIGLHFTRRNLL 640 
WD40-rpts      _______WD 6__________________)   (_________________WD 7________________)        

Query      641 LGFGCFGQ 648 
WD40-rpts              

7 WD40-repeats found in QUERY=F30F8.8 (Len=648):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   303-347      7.86  439.51  7.4e-05       27.5%     54.79
  WD 2:  Seg 11   384-422      9.71  515.58  7.0e-06       35.0%     54.55
  WD 3:  Seg 15   425-463      7.58  427.79  0.00011       17.5%     49.97
  WD 4:  Seg 19   467-505      9.22  495.65  1.3e-05       25.0%     47.30
  WD 5:  Seg 22   509-547     10.00  527.72  4.8e-06       37.5%     53.22
  WD 6:  Seg 26   548-590      7.73  434.10  8.8e-05       15.0%     50.75
  WD 7:  Seg 30   594-632      5.97  361.45  0.00084       12.5%     53.21

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  303-347    SAESPVSICMYTTVNAPIGVASCDFTDDSSLIAMGLSDSSIVMNA
   WD 2  384-422    -ST-----TSVRYTGHGGPVFSVNFSPDRRLLISSAGDRTVRLWS
   WD 3  425-463    -TQ-----RNAVIYRTPAVVWQAQFCSRGYYFATASADKTAAMWS
   WD 4  467-505    -MH-----PLRIFADPYGDVGCIDYHPNCNYIAGGSDDRYVRVWD
   WD 5  509-547    -GT-----RVRIFSGHKASIIAVKFSPCGRYIVSLDAIGNLMIWD
   WD 6  548-590    LAY--QRLVAAEITEQAGTKGSITFSRDGGVFAVSHGNSSIQLYS
   WD 7  594-632    -LI-----GTVLAAGQNDSYIEPKVNLDGFNIGSYATKETAVIGL

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD