Input parameters:

  Query = F32H2.4 (Len=331)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F32H2.4, Len=331):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVSSRERRCARLLTAADASTYFEKYKRIRSTDMKVQQCQSIAFNCDGTKLVCGAFDKKVSVANVDGGRLRFSWVGSSHS 80  
WD40-rpts                               (_________________WD 1________________)   (____________

Query       81 SSVEQVACSEKQPNLFASASADRNICVWDIRQSKPTHRISNRVGNFFISWSPCDEYFIFLDKDNRINTVDIRNYQVVNSY 160 
WD40-rpts      ______WD 2__________________)   (________________WD 3________________)   (______

Query      161 EMKTFSHELTFHPLSNHVFVAESGGKVEILKFAGGALEPVTSIQAHSHQVECLAVSISKDGRKLAVGASDASCSLWDLEE 240 
WD40-rpts      __________WD 4________________)(____________________WD 5____________________)   

Query      241 LICERVIPRHDYGIRAVSFSCNGQLLASGSEDHSIDIAYVPDGSRCHEIKHTGETYSVAWHPNSLLLAYTASDSMDNREA 320 
WD40-rpts      (_________________WD 6________________)(__________________WD 7_________________)

Query      321 AHVKTFGHSTV 331 
WD40-rpts                 

7 WD40-repeats found in QUERY=F32H2.4 (Len=331):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-64       8.64  471.39  2.8e-05       25.0%     56.02
  WD 2:  Seg  7    68-109      6.99  403.42  0.00023       37.5%     55.40
  WD 3:  Seg 11   113-150      7.31  416.77  0.00015       17.5%     54.24
  WD 4:  Seg 15   154-191      7.02  404.56  0.00022       10.0%     57.17
  WD 5:  Seg 19   192-237      8.35  459.76  4.0e-05       32.5%     54.80
  WD 6:  Seg 23   241-279      9.92  524.54  5.3e-06       40.0%     56.53
  WD 7:  Seg 27   280-320      7.06  406.14  0.00021       20.0%     45.85

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-64     -Y----KRIRSTD-M--KVQQCQ--SIAFNCDGTKL-VCGAFDKKVSVAN
   WD 2   68-109    -G----RLRFSWV-GSSHSSSVE--QVACSEKQPNLFASASADRNICVWD
   WD 3  113-150    -S----KPTHRIS-N--RVGNF---FISWSPCDEYF-IFLDKDNRINTVD
   WD 4  154-191    -Y----QVVNSYE-M--KTF-SH--ELTFHPLSNHV-FVAESGGKVEILK
   WD 5  192-237    FAGGALEPVTSIQ-A--HSHQVECLAVSISKDGRKL-AVGASDASCSLWD
   WD 6  241-279    -L----ICERVIP-R--HDYGIR--AVSFSCNGQLL-ASGSEDHSIDIAY
   WD 7  280-320    VP----DGSRCHEIK--HTGETY--SVAWHPNSLLL-AYTASDSMDNREA

   WD40 Template    TG----ECLRTLS-G--HTSGVT--SVSFSPDGKRL-VSGSEDGTIKVWD