Input parameters:

  Query = F33G12.2 (Len=305)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F33G12.2, Len=305):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKCPTVRARAIDCKQGAVRAVRYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNEVLDAASSSDNSQIAAGGADR 80  
WD40-rpts      (___________________WD 1___________________)   (_________________WD 2___________

Query       81 ACTVFDVETGKQLRRWRTHGAQVNAVAFNEESSVVFSGSMDCTMQAFDCRSRSEKPIQIFNESTDGILSIDVNGHEIVAG 160 
WD40-rpts      _____)   (_________________WD 3________________)   (_________________WD 4_______

Query      161 SADGNYRVYSIRDGNMTVDYMGDSVNSVSFTPDSNCLLAGVMGGIVRLIDKSSGKLLASYKGHQNTEYKLDCRVLQSIEH 240 
WD40-rpts      _________)(_________________WD 5_________________)   (__________________WD 6____

Query      241 VASGSEDGFVYVYSLLDSHIVSKLEHPSKVIHSLTAHPKKERLMTAAGQMIYLWVAEDDAEVLGE 305 
WD40-rpts      _____________)   (________________WD 7________________)          

7 WD40-repeats found in QUERY=F33G12.2 (Len=305):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       9.09  490.34  1.5e-05       27.5%     52.90
  WD 2:  Seg  5    48-86       9.52  507.84  8.9e-06       27.5%     55.90
  WD 3:  Seg  9    90-128      9.79  519.06  6.3e-06       32.5%     53.74
  WD 4:  Seg 13   132-170      8.64  471.54  2.7e-05       22.5%     48.77
  WD 5:  Seg 17   171-210      8.63  470.98  2.8e-05       30.0%     54.28
  WD 6:  Seg 21   214-254      8.14  450.73  5.2e-05       27.5%     57.22
  WD 7:  Seg 25   258-295      7.36  418.66  0.00014       17.5%     53.29

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MSKCPTVRARAIDCKQGAVRAVR--YNVDGNYCVTCGSDKTVKLWN
   WD 2   48-86     -SSL----LKTYSGTGNEVLDAA--SSSDNSQIAAGGADRACTVFD
   WD 3   90-128    -GKQ----LRRWRTHGAQVNAVA--FNEESSVVFSGSMDCTMQAFD
   WD 4  132-170    -RSE----KPIQIFNESTDGILS--IDVNGHEIVAGSADGNYRVYS
   WD 5  171-210    IRDG----NMTVDYMGDSVNSVS--FTPDSNCLLAGVMGGIVRLID
   WD 6  214-254    -GKL----LASYKGHQNTEYKLDCRVLQSIEHVASGSEDGFVYVYS
   WD 7  258-295    -SHI----VSKLEHPSKVIHSLT--AHPKKERLMTAA-GQMIYLWV

   WD40 Template    TGEC----LRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD