Input parameters:
Query = F35G12.4a (Len=683)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (F35G12.4a, Len=683):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSCVNTSQTGPKKKISFIIRDEHEYSNRSAVSALQYDAQNGRLFTGGSDTIIRTWSVPHHKDAFSARGGVRSPGKNSPV 80
WD40-rpts (________________WD 1_______________) (
Query 81 QYQGSLEQHTDWVNDMILCGHGKILISASNDTTVKVWNIERDNKHGFIDCIRTHKDYVSCLAYAPIVEKAVSASFDHNIF 160
WD40-rpts _________________WD 2________________) (_________________WD 3_______________
Query 161 VYDINANFKTVNNLIGCKDSIYSLATTPNLSLVLGAGTEKCIRLFDPRTNEKIMKLRGHTDNVRALVVNDDGTRALSAGS 240
WD40-rpts __)(___________________WD 4__________________) (_________________WD 5_________
Query 241 DATIRLWDIGQQRCIATCIAHEEGVWTLQVDSSFTTVYSAGKDKMVVKTPLYDFTKSQLLFKEEAPVKKLLLSEKDNPVS 320
WD40-rpts _______) (_________________WD 6________________) (__________________WD 7____
Query 321 LWVGTWKSDIKRWSIRPSAQLSIGGDEDGPSTSNANHSVSASSSPPVTFKYIRVKDQKGQQSTPELVIPGAPAIKKHAML 400
WD40-rpts _____________) (_______________________WD 8_____
Query 401 SDKRHVLTRDSDGNVALYDVLAARKIKDYGKRIFEEVVDENSRQVYIPSWFVVDSKSGMLQITLDELDALSSWLSSKDAG 480
WD40-rpts __________________) (_______________________WD
Query 481 FDDNDRETKLNYGGMMLRSLFERWPPCKMTNVDAADADDVQKATLNFISLPEHTPLIICEGNGRPLYRLLVGDAGKEFEA 560
WD40-rpts 9______________________)
Query 561 NELAQIAPMWVIDAIERNQLPKFNKMPFYLLPHPSTNPKQPKKDRLSATEMLQVKKVMEHVYEKILSTNDDITVGSIPLN 640
WD40-rpts
Query 641 QIHTKMEMYCNDQRLEPDMDLRTVKHLYWKQSGELLLHYKPVK 683
WD40-rpts
9 WD40-repeats found in QUERY=F35G12.4a (Len=683):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 21-57 7.94 442.59 6.7e-05 22.5% 46.56
WD 2: Seg 6 80-118 7.85 439.11 7.5e-05 35.0% 51.28
WD 3: Seg 10 124-163 9.72 516.14 6.9e-06 25.0% 46.36
WD 4: Seg 13 164-206 7.90 441.10 7.1e-05 15.0% 55.22
WD 5: Seg 17 210-248 9.91 523.85 5.4e-06 37.5% 53.68
WD 6: Seg 21 252-290 8.06 447.54 5.8e-05 17.5% 56.67
WD 7: Seg 25 294-334 5.97 361.38 0.00084 20.0% 48.20
WD 8: Seg 32 368-419 6.56 385.79 0.00039 15.0% 54.88
WD 9: Seg 39 455-505 5.52 342.56 0.00150 7.5% 20.08
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 21-57 RD---E---H------------EYSNRSAVSALQYDAQNG--RLFTGGSDTIIRT-----------WS
WD 2 80-118 -V---QYQGS------------LEQHTDWVNDMILCGHGK--ILISASNDTTVKV-----------WN
WD 3 124-163 KH---GFIDC------------IRTHKDYVSCLAYAPIVE--KAVSASFDHNIFV-----------YD
WD 4 164-206 INANFKTVNN------------LIGCKDSIYSLATTPNLS--LVLGAGTEKCIRL-----------FD
WD 5 210-248 -N---EKIMK------------LRGHTDNVRALVVNDDGT--RALSAGSDATIRL-----------WD
WD 6 252-290 -Q---RCIAT------------CIAHEEGVWTLQVDSSFT--TVYSAGKDKMVVK-----------TP
WD 7 294-334 -F---TKSQL------------LFKEEAPVKKLLLSEKDNPVSLWVGTWKSDIKR-----------WS
WD 8 368-419 TF---KYIRVKDQKGQQSTPELVIPGAPAIKKHAMLSDKR--HVLTRDSDGNVAL-----------YD
WD 9 455-505 SK---SGMLQ------------ITLDELDALSSWLSSKDA--GFDDNDRETKLNYGGMMLRSLFERWP
WD40 Template TG---ECLRT------------LSGHTSGVTSVSFSPDGK--RLVSGSEDGTIKV-----------WD