Input parameters:

  Query = F35G12.4b (Len=680)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F35G12.4b, Len=680):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSCVNTSQTGPKKKISFIIRDEHEYSNRSAVSALQYDAQNGRLFTGGSDTIIRTWSVPHHKDAFSARGGVRSPGKNSPV 80  
WD40-rpts                          (________________WD 1_______________)                       

Query       81 QYQGSLEQHTDWVNDMILCGHGKILISASNDTTVKVWNIERDNKHGFIDCIRTHKDYVSCLAYAPIVEKAVSASFDHNIF 160 
WD40-rpts           (______________WD 2_____________)     (_________________WD 3_______________

Query      161 VYDINANFKTVNNLIGCKDSIYSLATTPNLSLVLGAGTEKCIRLFDPRTNEKIMKLRGHTDNVRALVVNDDGTRALSAGS 240 
WD40-rpts      __)(___________________WD 4__________________)   (_________________WD 5_________

Query      241 DATIRLWDIGQQRCIATCIAHEEGVWTLQVDSSFTTVYSAGKDKMVVKTPLYDFTKSQLLFKEEAPVKKLLLSEKDNPVS 320 
WD40-rpts      _______)   (_________________WD 6________________)   (__________________WD 7____

Query      321 LWVGTWKSDIKRWSIRPSAQLSIGGDEDGPSTSNANHSVSASSSPPVTFKYIRVKDQKGQQSTPELVIPGAPAIKKHAML 400 
WD40-rpts      _____________)                                 (_______________________WD 8_____

Query      401 SDKRHVLTRDSDGNVALYDVLAARKIKDYGKRIFEEVVDENSRQVYIPSWFVVDSKSGMLQITLDELDALSSWLSSKDAG 480 
WD40-rpts      __________________)                                   (_______________________WD

Query      481 FDDNDRETKLNYGGMMLRSLFERWPPCKMTNVDAADADDVQKATLNFISLPEHTPLIICEGNGRPLYRLLVGDAGKEFEA 560 
WD40-rpts       9______________________)                                                       

Query      561 NELAQIAPMWVIDAIERNQLPKFNKMPFYLLPHPSTNPKQPKKDRLSATEMLQVKKVMEHVYEKILSTNDVGSIPLNQIH 640 
WD40-rpts                                                                                      

Query      641 TKMEMYCNDQRLEPDMDLRTVKHLYWKQSGELLLHYKPVK 680 
WD40-rpts                                              

9 WD40-repeats found in QUERY=F35G12.4b (Len=680):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    21-57       7.93  442.31  6.8e-05       22.5%     46.10
  WD 2:  Seg  7    86-118      8.15  451.46  5.1e-05       35.0%     41.17
  WD 3:  Seg 10   124-163      9.71  515.82  6.9e-06       25.0%     46.15
  WD 4:  Seg 13   164-206      7.94  442.56  6.7e-05       15.0%     55.11
  WD 5:  Seg 17   210-248      9.93  524.84  5.2e-06       37.5%     54.16
  WD 6:  Seg 21   252-290      8.09  448.65  5.6e-05       17.5%     56.91
  WD 7:  Seg 25   294-334      5.97  361.47  0.00084       20.0%     48.69
  WD 8:  Seg 32   368-419      6.62  388.15  0.00037       15.0%     54.84
  WD 9:  Seg 39   455-505      5.44  339.39  0.00166        7.5%     20.06

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-57     RD---E---H------------EYSNRSAVSALQYDAQNG--RLFTGGSDTIIRT-----------WS
   WD 2   86-118    ----------------------LEQHTDWVNDMILCGHGK--ILISASNDTTVKV-----------WN
   WD 3  124-163    KH---GFIDC------------IRTHKDYVSCLAYAPIVE--KAVSASFDHNIFV-----------YD
   WD 4  164-206    INANFKTVNN------------LIGCKDSIYSLATTPNLS--LVLGAGTEKCIRL-----------FD
   WD 5  210-248    -N---EKIMK------------LRGHTDNVRALVVNDDGT--RALSAGSDATIRL-----------WD
   WD 6  252-290    -Q---RCIAT------------CIAHEEGVWTLQVDSSFT--TVYSAGKDKMVVK-----------TP
   WD 7  294-334    -F---TKSQL------------LFKEEAPVKKLLLSEKDNPVSLWVGTWKSDIKR-----------WS
   WD 8  368-419    TF---KYIRVKDQKGQQSTPELVIPGAPAIKKHAMLSDKR--HVLTRDSDGNVAL-----------YD
   WD 9  455-505    SK---SGMLQ------------ITLDELDALSSWLSSKDA--GFDDNDRETKLNYGGMMLRSLFERWP

   WD40 Template    TG---ECLRT------------LSGHTSGVTSVSFSPDGK--RLVSGSEDGTIKV-----------WD