Input parameters:
Query = F35G12.4c (Len=697)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (F35G12.4c, Len=697):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSCVNTSQTGPKKKISFIIRDEHEYSNRSAVSALQYDAQNGRLFTGGSDTIIRTWSVPHHKDAFSARGGVRSPGKNSPV 80
WD40-rpts (________________WD 1_______________)
Query 81 QYQGSLEQHTDWVNDMILCGHGKILISASNDTTVKVWNIERDNKHGFIDCIRTHKDYVSCLAYAPIVEKAVSASFDHNIF 160
WD40-rpts (______________WD 2_____________) (_________________WD 3_______________
Query 161 VYDINANFKTVNNLIGCKDSIYSLATTPNLSLVLGAGTEKCIRLFDPRTNEKIMKLRGHTDNVRALVVNDDGTRALSAGS 240
WD40-rpts __)(___________________WD 4__________________) (_________________WD 5_________
Query 241 DATIRLWDIGQQRCIATCIAHEEGVWTLQVDSSFTTVYSAGKDKMVVKTPLYDFTKSQLLFKEEAPVKKLLLSEKDNPVS 320
WD40-rpts _______)(__________________WD 6__________________) (__________________WD 7____
Query 321 LWVGTWKSDIKRWSIRPSAQLSIGGDEDGPSTSNANHSVSASSSPPVTFKYIRVKDQKGQQSTPELVIPGAPAIKKHAML 400
WD40-rpts _____________) (_______________________WD 8_____
Query 401 SDKRHVLTRDSDGNVALYDVLAARKIKDYGKRIFEEVVDENSRQVYIPSWFVVDSKSGMLQITLDELDALSSWLSSKDAG 480
WD40-rpts __________________) (_______________________WD
Query 481 FDDNDRETKLNYGGMMLRSLFERWPPCKMTNVDAADADDVQKATLNFISLPEHTPLIICEGNGRPLYRLLVGDAGKEFEA 560
WD40-rpts 9______________________)
Query 561 NELAQIAPMWVIDAIERNQLPKFNKMPFYLLPHPSTNPKQPKKDRLSATEMLQVKKVMEHVYEKILSTNDGKVFRNKKIL 640
WD40-rpts
Query 641 MVFEDITVGSIPLNQIHTKMEMYCNDQRLEPDMDLRTVKHLYWKQSGELLLHYKPVK 697
WD40-rpts
9 WD40-repeats found in QUERY=F35G12.4c (Len=697):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 21-57 7.85 438.82 7.6e-05 22.5% 46.12
WD 2: Seg 7 86-118 8.13 450.29 5.3e-05 35.0% 42.10
WD 3: Seg 10 124-163 9.68 514.69 7.2e-06 25.0% 46.43
WD 4: Seg 13 164-206 7.88 440.03 7.3e-05 15.0% 53.94
WD 5: Seg 17 210-248 9.89 523.31 5.5e-06 37.5% 54.41
WD 6: Seg 21 249-290 8.05 447.07 5.9e-05 20.0% 57.54
WD 7: Seg 25 294-334 5.83 355.38 0.00101 20.0% 49.17
WD 8: Seg 32 368-419 6.37 377.87 0.00050 15.0% 55.42
WD 9: Seg 40 455-505 5.40 337.61 0.00175 7.5% 19.07
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 21-57 RD---E---H------------EYSNRSAVSALQYDAQNG--RLFTGGSDTIIRT-----------WS
WD 2 86-118 ----------------------LEQHTDWVNDMILCGHGK--ILISASNDTTVKV-----------WN
WD 3 124-163 KH---GFIDC------------IRTHKDYVSCLAYAPIVE--KAVSASFDHNIFV-----------YD
WD 4 164-206 INANFKTVNN------------LIGCKDSIYSLATTPNLS--LVLGAGTEKCIRL-----------FD
WD 5 210-248 -N---EKIMK------------LRGHTDNVRALVVNDDGT--RALSAGSDATIRL-----------WD
WD 6 249-290 IG-QQRCIAT------------CIAHEEGVWTLQVDSSFT--TVYSAGKDKMVVK-----------TP
WD 7 294-334 -F---TKSQL------------LFKEEAPVKKLLLSEKDNPVSLWVGTWKSDIKR-----------WS
WD 8 368-419 TF---KYIRVKDQKGQQSTPELVIPGAPAIKKHAMLSDKR--HVLTRDSDGNVAL-----------YD
WD 9 455-505 SK---SGMLQ------------ITLDELDALSSWLSSKDA--GFDDNDRETKLNYGGMMLRSLFERWP
WD40 Template TG---ECLRT------------LSGHTSGVTSVSFSPDGK--RLVSGSEDGTIKV-----------WD