Input parameters:

  Query = F38A6.2a (Len=891)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F38A6.2a, Len=891):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSISNGWSSSSIISDVLPEEEFEEVEEDELILNENDRLKFRVDELEKIVVAQRNEILLLQSSTVEILRRLQNLEIQDQSR 80  
WD40-rpts                                                                                      

Query       81 SPTCSGYSSLPRRISGSKSSYTMSPSHAPPRSSHANSKSLYINGMNNNSEEVSPGPPRHRPPTRGSDGMVNVSVGKSARG 160 
WD40-rpts                                                (_____________WD 1_____________) (____

Query      161 SPMRKWVSTHDMKDTDRFRRLSTSSEASTSATMNPIVNSVRRLSTTHRQSSPSLLSLCSVISRSPSTSSILRKNNRTCQF 240 
WD40-rpts      _____________WD 2________________)                                              

Query      241 SNGSGHLPIFIGGKTVQVPVPTGYENMDPTMDQDPPTMKVTLKHVYSYRGKDVRSNIEMLPTGELVFFSANLVVLMNITG 320 
WD40-rpts                                                                                      

Query      321 EDRSQRIYHGHTCDVKCITLHPNKILVASGQSSCHSVEKFQKPEHTSPIDSPEDLVRQLEMEHTEAHVRIWDTIKLTTLM 400 
WD40-rpts       (________________WD 3________________)   (____________WD 4____________)   (____

Query      401 VLNGFEKGICHVAFSKTDSGSLLAVVDDSLKHLMSVWNWQKGKREGEVKASNDVVFECKWHPTIRNLIVLYGKGHFSFFN 480 
WD40-rpts      _______________WD 5__________________)   (_________________WD 6________________)

Query      481 YDPATGVLVKTVATFEGRDKPKTVLSMCFGENDQVVTGDSNGTISIWDPRTCKTTKQAHSVHPGGVYSLTLAKSGKILSG 560 
WD40-rpts           (___________________WD 7__________________)(__________________WD 8_________

Query      561 GKDRMVSEWDLQDLVRTRRPIELPDEKGFPRVILQNGSELIIGTSSNTLLFGNIENSTNLTSLIEGDPGNLTFLLTCSSN 640 
WD40-rpts      _________)    (_________________WD 9________________)   (_________________WD10__

Query      641 QLITSSQCGTLRIWNHIDKKVEFSKKFIDSVECVDVDVTNTHIILGFAAGLWIVMNITKQQTIQEKKEGTAPITAVKFAP 720 
WD40-rpts      ______________)  (_________________WD11________________)   (_________________WD1

Query      721 SGATFAVATKDPHLTIYRIDASKNLLVIARIHHIPAPIVALDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWG 800 
WD40-rpts      2________________)(____________________WD13___________________)                 

Query      801 SSRVKIGFETALVAHSSNGQVTAVAQCEDISACGMENGTIRIYKNPVTSVTAGFVELLGHGRIIKSVAFSNKIQLFSCSP 880 
WD40-rpts            (________________WD14________________)      (_________________WD15________

Query      881 TDNSVFEWCLE 891 
WD40-rpts      ________)  

15 WD40-repeats found in QUERY=F38A6.2a (Len=891):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   123-154      2.85  232.48  0.04487       20.0%     -5.63
  WD 2:  Seg  3   156-194      2.88  233.55  0.04345       12.5%     -16.27
  WD 3:  Seg 10   322-359      6.14  368.14  0.00068       22.5%     53.34
  WD 4:  Seg 14   363-392      3.10  242.55  0.03303       12.5%     27.33
  WD 5:  Seg 16   396-438      6.98  402.82  0.00023       27.5%     44.33
  WD 6:  Seg 20   442-480      5.67  348.99  0.00123       12.5%     55.72
  WD 7:  Seg 24   486-528      5.86  356.55  0.00097       30.0%     54.41
  WD 8:  Seg 28   529-570      7.08  407.03  0.00020       32.5%     49.35
  WD 9:  Seg 32   575-613      6.70  391.40  0.00033       12.5%     53.95
  WD10:  Seg 36   617-655      7.96  443.32  6.6e-05       20.0%     52.99
  WD11:  Seg 40   658-696      6.73  392.57  0.00032       12.5%     55.66
  WD12:  Seg 44   700-738      8.24  455.00  4.6e-05       17.5%     58.47
  WD13:  Seg 48   739-783      7.22  412.86  0.00017       15.0%     56.52
  WD14:  Seg 54   807-844      7.06  406.29  0.00021       22.5%     49.27
  WD15:  Seg 58   851-889      7.37  419.03  0.00014       22.5%     53.28

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  123-154    ----------------N-----GMNNNSEEVSPGPPRHRP----PTRGSDGMVNVSV
   WD 2  156-194    -KS-----A---RGSPM-----RKWVSTHDMKDTDRFRRL----STSSEASTSATMN
   WD 3  322-359    -DR-----S---QRIYH-----GHTCDVKCITLHPNKILV----ASGQ-SSCHSVEK
   WD 4  363-392    -PE-----H---TSPID-----SPEDLV---------RQL----EMEHTEAHVRIWD
   WD 5  396-438    -LT-----T---LMVLN-----GFEKGICHVAFSKTDSGSLLAVVDDSLKHLMSVWN
   WD 6  442-480    -GK-----R---EGEVK-----ASNDVVFECKWHPTIRNL----IVLYGKGHFSFFN
   WD 7  486-528    -GV-----L---VKTVATFEGRDKPKTVLSMCFGENDQ-V----VTGDSNGTISIWD
   WD 8  529-570    PRT-----CKTTKQAHS-----VHPGGVYSLTLAKSGK-I----LSGGKDRMVSEWD
   WD 9  575-613    -VR-----T---RRPIE-----LPDEKGFPRVILQNGSEL----IIGTSSNTLLFGN
   WD10  617-655    -ST-----N---LTSLI-----EGDPGNLTFLLTCSSNQL----ITSSQCGTLRIWN
   WD11  658-696    -DK-----K---VEFSK-----KFIDSVECVDVDVTNTHI----ILGFAAGLWIVMN
   WD12  700-738    -QQ-----T---IQEKK-----EGTAPITAVKFAPSGATF----AVATKDPHLTIYR
   WD13  739-783    IDASKNLLV---IARIH-----HIPAPIVALDFSSDSQYL----RGQSIGAHLLFWT
   WD14  807-844    GFE-----T-----ALV-----AHSSNGQVTAVAQCEDIS----ACGMENGTIRIYK
   WD15  851-889    -TA-----G---FVELL-----GHGRIIKSVAFSNKIQLF----SCSPTDNSVFEWC

   WD40 Template    TGE-----C---LRTLS-----GHTSGVTSVSFSPDGKRL----VSGSEDGTIKVWD