Input parameters:

  Query = F38E11.5 (Len=1000)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F38E11.5, Len=1000):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMH 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKWAMKQSFEGHTHYVMQIAINPKDNNTFAT 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDKTVKVWQFGSNVPNFTLEGHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPLIITGSEDSTVRLWHANTYRLETTLNYGLERVWCIQAQKGANTIAIGYDEGSVTLKLGREEPAVSMDSSGKILWAKHS 320 
WD40-rpts      ________________)   (_________________WD 7________________)  (_________________W

Query      321 EIQQANLKTISTEESEAIQDGERLPLSVKDLGSSEIYPQTLAHSSNGRFVVACGDGEYIVYTAMALRNKDFGQGLEFVWA 400 
WD40-rpts      D 8________________)(___________________WD 9__________________)                 

Query      401 VDPNMFAVRESATNVKIKKNFKDHKSIRSDMVLEGISGGPLLALRSNNSLCFFDWESAVLVRRIEITSKSIYWSDNGEMV 480 
WD40-rpts                                                            (_________________WD10____

Query      481 AICGDDSFYVLKYSAEAVANATEVTEDGIEDAFEVIGEQAEAVKTGFWIGDCFIFTTALNRINYYVGGEIVTIAHVDRPL 560 
WD40-rpts      ____________)                                                     (_____________

Query      561 YLLGYMAKESRVYAVDKDLNVISYKLLLSVLEYQTAVMRRDFDTADKVLTTIPKEQRTRVAHFLEKQGFKKQALAVSQDP 640 
WD40-rpts      ____WD11________________)                                                       

Query      641 DHKFDLSVALGDLKTAYDLALQSDSEEKWKALSNAATLKSELLLAGECLGRARDFGGLMLLATCAGSAPLLQKLADDSAA 720 
WD40-rpts                                                                                      

Query      721 AESHNISFLSSLLLGDIDACLDKLISTGRLPEAAFLARTHAPSRVSSILELWKAKASGHSEKSSRKIGESLADPVKYENL 800 
WD40-rpts                                                                                      

Query      801 FPGFTQSLKAESFVREISKIPVPASVRVPSAATRNIQEELDEAVASGAVSFTDDGQAVLKNAPRQTETQLKAPPPPSVAR 880 
WD40-rpts                                                                                      

Query      881 QPSPVRQPSPIREPSPIREPEPEEEEEQEEFDDDQQEVHVPANQESADAHGTSKTPDVVLETSRPDIVPPRGSAAPDLVS 960 
WD40-rpts                                                                                      

Query      961 ASSQQSAQDFQDDTQWSDEDFGDAENGDLNMDDLNLDEED 1000
WD40-rpts                                              

11 WD40-repeats found in QUERY=F38E11.5 (Len=1000):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       5.75  352.08  0.00112       20.0%     53.47
  WD 2:  Seg  5    47-85       6.80  395.63  0.00029       22.5%     55.92
  WD 3:  Seg  9    89-127      7.86  439.53  7.4e-05       25.0%     55.13
  WD 4:  Seg 13   128-171      7.22  412.82  0.00017       30.0%     52.40
  WD 5:  Seg 17   172-215      7.91  441.61  7.0e-05       37.5%     50.33
  WD 6:  Seg 21   219-257      9.61  511.75  7.9e-06       40.0%     55.11
  WD 7:  Seg 25   261-299      4.42  297.23  0.00613       12.5%     54.36
  WD 8:  Seg 29   302-340      3.51  259.85  0.01944       10.0%     44.97
  WD 9:  Seg 33   341-383      3.26  249.51  0.02670       12.5%     49.72
  WD10:  Seg 43   455-493      2.79  229.85  0.04861       12.5%     34.47
  WD11:  Seg 51   547-585      2.80  230.33  0.04790       12.5%     54.55

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RLD---VK--RKLLARSDRVKCVDLHP-VETW--LLAALYNGNVHIWN
   WD 2   47-85     -QT---LV--KSFEVCDVPVRAAKFVP-RKSW--VVTGSDDMHIRVFN
   WD 3   89-127    -LE---RV--HQFEAHSDYLRSLVVHP-TLPY--VISSSDDMLVKMWD
   WD 4  128-171    WDNKWAMK--QSFEGHTHYVMQIAINPKDNNT--FATASLDKTVKVWQ
   WD 5  172-215    FGS---NVPNFTLEGHEKGVNCVDYYH-GGEKPYIISGADDHLVKIWD
   WD 6  219-257    -KT---CV--QTLDGHAQNVSSVCFHP-ELPL--IITGSEDSTVRLWH
   WD 7  261-299    -YR---LE--TTLNYGLERVWCIQAQK-GANT--IAIGYDEGSVTLKL
   WD 8  302-340    -EE---PA--VSMDSSGKILWAKHSEI-QQAN--LKTISTEESEAIQD
   WD 9  341-383    GERLPLSV--KDLGSSEIYPQTLAHSS-NGRF--VVACGDGEYIVYTA
   WD10  455-493    -WE---SA--VLVRRIEITSKSIYWSD-NGEM--VAICGDDSFYVLKY
   WD11  547-585    GGE----I--VTIAHVDRPLYLLGYMA-KESR--VYAVDKDLNVISYK

   WD40 Template    TGE---CL--RTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD