Input parameters:

  Query = F39H12.2 (Len=347)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F39H12.2, Len=347):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFEKVKEVALPQGTVSPWPSNLAVCWLDTRNITYVAVIQSNNIHIGSWDNKAETEVTWETIQTSEPVSITEKIIDVTSVG 80  
WD40-rpts                                   (_________________WD 1________________)(___________

Query       81 LVHPNARNFPIVIVGSTRFIHVYDAKKVTQKPLFSIALGVALRDYVPAVGKDVGPYCRGVTCNDNAVLVGTHTGEIVVIM 160 
WD40-rpts      _____WD 2________________)           (____________________WD 3__________________

Query      161 CNGDSNFSSRKNLKEHRCAITDIATCRYDEITVSADSNGELIIWQKPVKGVNSRVITKQHINVINVLRKQVIVGTLRGIV 240 
WD40-rpts      _)     (________________WD 4________________)(_________________WD 5_____________

Query      241 QYYSVTTGDLMCEINAHSRPVNSVSVAPESAYVLTSSEDGTFIVSKLHTRKPHAYQVEYRFSDSDPSNVIMGAQFTNGRG 320 
WD40-rpts      ___)   (_________________WD 6________________)     (____________________WD 7____

Query      321 SAIAIAAFDSNVLVMYKIIKKTAVPAT 347 
WD40-rpts      ________________)          

7 WD40-repeats found in QUERY=F39H12.2 (Len=347):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    30-68       7.06  406.49  0.00021        7.5%     39.77
  WD 2:  Seg  6    69-106      4.41  296.63  0.00625        7.5%     20.23
  WD 3:  Seg 10   118-162      6.91  400.02  0.00025       10.0%     41.17
  WD 4:  Seg 14   168-205      8.74  475.73  2.4e-05       17.5%     46.26
  WD 5:  Seg 17   206-244      4.43  297.63  0.00606       10.0%     38.93
  WD 6:  Seg 21   248-286      9.86  521.98  5.7e-06       32.5%     55.17
  WD 7:  Seg 25   292-337      4.16  286.51  0.00854        7.5%     41.05

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-68     -RNITY-----VAVIQSNNIHIGSW------DNKAETEVTWETI-QTSEPVS
   WD 2   69-106    ITE--K-----IIDVTSVGLVHPNA------RNFPIVIVGSTRF-IHVYDAK
   WD 3  118-162    LGVALRDYVPAVGKDVGPYCRGVTC------NDNAVLVGTHTGE-IVVIMCN
   WD 4  168-205    --SSRK-----NLKEHRCAITDIAT------CRYDEITVSADSN-GELIIWQ
   WD 5  206-244    -KPVKG-----VNSRVITKQHINVI------NVLRKQVIVGTLR-GIVQYYS
   WD 6  248-286    -GDLMC-----EINAHSRPVNSVSV------APESAYVLTSSED-GTFIVSK
   WD 7  292-337    -PHAYQ-----VEYRFSDSDPSNVIMGAQFTNGRGSAIAIAAFDSNVLVMYK

   WD40 Template    TGECLR-----TLSGHTSGVTSVSF------SPDGKRLVSGSED-GTIKVWD